Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31971
(496 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 5e-39
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 2e-38
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 153 8e-38
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 2e-37
SB_56| Best HMM Match : Actin (HMM E-Value=0) 152 2e-37
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 2e-37
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 138 2e-33
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 49 2e-06
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 47 1e-05
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 4.9
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37) 27 8.5
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 157 bits (381), Expect = 5e-39
Identities = 72/78 (92%), Positives = 75/78 (96%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
VMSGGT MYPG+ADRMQKEI ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 272 VMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 331
Query: 314 SKEEYDESGPGIVHRKCF 261
SK+EYDESGP IVHRKCF
Sbjct: 332 SKQEYDESGPAIVHRKCF 349
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 155 bits (375), Expect = 2e-38
Identities = 71/78 (91%), Positives = 74/78 (94%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGGT MYPGIADRMQKEI ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 261 VLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 320
Query: 314 SKEEYDESGPGIVHRKCF 261
SK+EYDESGP IVHRKCF
Sbjct: 321 SKQEYDESGPAIVHRKCF 338
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 153 bits (371), Expect = 8e-38
Identities = 70/78 (89%), Positives = 74/78 (94%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGG+ MYPGIADRMQKEI ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 299 VLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 358
Query: 314 SKEEYDESGPGIVHRKCF 261
SK+EYDESGP IVHRKCF
Sbjct: 359 SKQEYDESGPSIVHRKCF 376
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 152 bits (368), Expect = 2e-37
Identities = 69/78 (88%), Positives = 74/78 (94%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGG+ MYPGIADRMQKEI +LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 299 VLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 358
Query: 314 SKEEYDESGPGIVHRKCF 261
SK+EYDESGP IVHRKCF
Sbjct: 359 SKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 152 bits (368), Expect = 2e-37
Identities = 69/78 (88%), Positives = 74/78 (94%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGG+ MYPGIADRMQKEI +LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 298 VLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 357
Query: 314 SKEEYDESGPGIVHRKCF 261
SK+EYDESGP IVHRKCF
Sbjct: 358 SKQEYDESGPSIVHRKCF 375
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 151 bits (367), Expect = 2e-37
Identities = 69/78 (88%), Positives = 74/78 (94%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGG+ M+PGIADRMQKEI ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 298 VLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 357
Query: 314 SKEEYDESGPGIVHRKCF 261
SK+EYDESGP IVHRKCF
Sbjct: 358 SKQEYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 138 bits (334), Expect = 2e-33
Identities = 62/78 (79%), Positives = 71/78 (91%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGG+ M+PGIADRMQKEI LA +++K+K+IAPPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 72 VLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWI 131
Query: 314 SKEEYDESGPGIVHRKCF 261
+KEEY E GP IVHRKCF
Sbjct: 132 AKEEYHEYGPPIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXA----------------LAPSTIKIKIIAPPERKYSVWI 363
V+SGG+ M+ R+Q++I + P I+ ++I+ ++Y+VW
Sbjct: 247 VLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWF 306
Query: 362 GGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 261
GGS+LAS F + +K +YDE GP I F
Sbjct: 307 GGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/55 (34%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIA---PPERKYSVWIGGSILASL 339
+++GG + G +R+ +E+ + P ++++K+I+ E++++ WIGGSILASL
Sbjct: 176 IVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = -3
Query: 410 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 288
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPST-------IK-IKIIAPP-ERKYSVWIGGSILAS 342
V+ GGT M PG R+ +EI L S IK +K+ PP + W+GG+I S
Sbjct: 82 VLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGS 141
Query: 341 LSTFQQMWISKEEYDE 294
L ++E Y +
Sbjct: 142 LEVLADRSTTRERYQQ 157
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 352 MDPPIHTEYFLSGGAMILILMVEGARAXISFCILSAIPGYMXVPPD 489
+DPP+ +Y L+GG ++ ++ FCI + PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQGF--VVPTPPE 801
>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
Length = 352
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 165 SGITRYNVLTVAFRTRTSTTPHSTGVT 245
+GIT N++T A T TSTT + VT
Sbjct: 294 NGITNTNIITTATTTTTSTTISTITVT 320
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,999,185
Number of Sequences: 59808
Number of extensions: 254297
Number of successful extensions: 720
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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