Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31971
(496 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 148 2e-36
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 148 2e-36
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 148 2e-36
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 148 2e-36
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 147 3e-36
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 147 3e-36
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 143 7e-35
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 143 7e-35
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 134 3e-32
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 127 4e-30
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 116 1e-26
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 103 5e-23
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 85 3e-17
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 71 4e-13
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 61 3e-10
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 56 1e-08
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 47 8e-06
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 44 6e-05
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 39 0.002
At5g43500.2 68418.m05318 expressed protein 31 0.56
At5g43500.1 68418.m05319 expressed protein 31 0.56
At3g20270.2 68416.m02568 lipid-binding serum glycoprotein family... 27 5.3
At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family... 27 5.3
At3g24210.1 68416.m03038 ankyrin repeat family protein contains ... 27 6.9
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 148 bits (359), Expect = 2e-36
Identities = 66/78 (84%), Positives = 73/78 (93%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGG+ M+PGIADRM KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 314 SKEEYDESGPGIVHRKCF 261
SK EYDESGP IVHRKCF
Sbjct: 360 SKSEYDESGPSIVHRKCF 377
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 148 bits (359), Expect = 2e-36
Identities = 66/78 (84%), Positives = 73/78 (93%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGGT M+PGIADRM KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 314 SKEEYDESGPGIVHRKCF 261
+K EYDESGP IVHRKCF
Sbjct: 360 AKAEYDESGPSIVHRKCF 377
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 148 bits (359), Expect = 2e-36
Identities = 66/78 (84%), Positives = 73/78 (93%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGGT M+PGIADRM KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 314 SKEEYDESGPGIVHRKCF 261
+K EYDESGP IVHRKCF
Sbjct: 360 AKAEYDESGPSIVHRKCF 377
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 148 bits (359), Expect = 2e-36
Identities = 66/78 (84%), Positives = 73/78 (93%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGGT M+PGIADRM KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 314 SKEEYDESGPGIVHRKCF 261
+K EYDESGP IVHRKCF
Sbjct: 360 AKAEYDESGPSIVHRKCF 377
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 147 bits (357), Expect = 3e-36
Identities = 66/78 (84%), Positives = 73/78 (93%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGGT M+ GIADRM KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 314 SKEEYDESGPGIVHRKCF 261
SK EYDE+GPGIVHRKCF
Sbjct: 360 SKAEYDEAGPGIVHRKCF 377
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 147 bits (357), Expect = 3e-36
Identities = 66/78 (84%), Positives = 73/78 (93%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGGT M+ GIADRM KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 314 SKEEYDESGPGIVHRKCF 261
SK EYDE+GPGIVHRKCF
Sbjct: 360 SKAEYDEAGPGIVHRKCF 377
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 143 bits (346), Expect = 7e-35
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGGT M+ GI DRM KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 314 SKEEYDESGPGIVHRKCF 261
+K EYDESGP IVHRKCF
Sbjct: 360 AKAEYDESGPSIVHRKCF 377
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 143 bits (346), Expect = 7e-35
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGGT M+ GI DRM KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 300 VLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI 359
Query: 314 SKEEYDESGPGIVHRKCF 261
+K EYDESGP IVHRKCF
Sbjct: 360 AKAEYDESGPSIVHRKCF 377
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 134 bits (324), Expect = 3e-32
Identities = 59/78 (75%), Positives = 68/78 (87%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGGT M+PGIADRM KEI ALAP ++KIK++APPERKYSVW+GGSILASLS+F MWI
Sbjct: 301 VLSGGTTMFPGIADRMNKEINALAPPSMKIKVVAPPERKYSVWVGGSILASLSSFAPMWI 360
Query: 314 SKEEYDESGPGIVHRKCF 261
+K EYDE G IVHRKCF
Sbjct: 361 TKAEYDEQGGAIVHRKCF 378
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 127 bits (307), Expect = 4e-30
Identities = 56/78 (71%), Positives = 68/78 (87%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGGT M+ GI +RM KEI ALA + ++IKI+APPERKYSVWIGGSILASLST++QMWI
Sbjct: 252 VLSGGTTMFRGIEERMTKEINALAAANMRIKIVAPPERKYSVWIGGSILASLSTYEQMWI 311
Query: 314 SKEEYDESGPGIVHRKCF 261
+K EY+E+GP IVH KCF
Sbjct: 312 TKAEYEENGPAIVHTKCF 329
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 116 bits (278), Expect = 1e-26
Identities = 50/77 (64%), Positives = 63/77 (81%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
+M+GGT M GI +RM KE+ AL PS++K+K++ PPE + SVWIGGSILASLSTF QMWI
Sbjct: 289 LMTGGTTMLHGIKERMTKELNALVPSSMKVKVVVPPESECSVWIGGSILASLSTFHQMWI 348
Query: 314 SKEEYDESGPGIVHRKC 264
+K+EY+E G IVHRKC
Sbjct: 349 TKDEYEEHGAAIVHRKC 365
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 103 bits (248), Expect = 5e-23
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
V+SGGT M+ GIADRM KEI ALAPS++KIK++APPERKYSVWIGGSILASLSTFQQ+ I
Sbjct: 300 VLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVKI 359
Query: 314 SK 309
+
Sbjct: 360 DQ 361
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 84.6 bits (200), Expect = 3e-17
Identities = 36/80 (45%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAP---PERKYSVWIGGSILASLSTFQQ 324
+++GGT + +R++K++ +P + ++K++A ER++SVWIGGSILASL +FQQ
Sbjct: 361 LLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQ 420
Query: 323 MWISKEEYDESGPGIVHRKC 264
MW SK EY+E G + RKC
Sbjct: 421 MWFSKSEYEEHGASYIQRKC 440
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 70.9 bits (166), Expect = 4e-13
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERK------YSVWIGGSILASLST 333
V+ GGT G R QKE L S I+ ++ PPE YS W+GG+ILA +
Sbjct: 281 VLCGGTTSMTGFESRFQKEAN-LCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVF 339
Query: 332 FQQMWISKEEYDESGPGIVHRKCF 261
Q ++K +YDE+GP +VHRKCF
Sbjct: 340 PQNQHVTKADYDETGPSVVHRKCF 363
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 61.3 bits (142), Expect = 3e-10
Identities = 26/78 (33%), Positives = 45/78 (57%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
+++GG+ ++P + +R++ E+ L P +KI + VW GGS+LAS F+ M +
Sbjct: 343 ILTGGSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCV 402
Query: 314 SKEEYDESGPGIVHRKCF 261
+K EY+E G R+ F
Sbjct: 403 TKAEYEELGSARCRRRFF 420
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 56.0 bits (129), Expect = 1e-08
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 12/81 (14%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTI-----------KIKIIAPPERKYSVWIGGSIL 348
V+SGG+ MYPG+ R++KEI T+ +++I PP RK+ V++GG++L
Sbjct: 299 VLSGGSTMYPGLPSRLEKEIQDRYLDTVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVL 358
Query: 347 AS-LSTFQQMWISKEEYDESG 288
A + + WI++E+Y E G
Sbjct: 359 AGIMKDAPEFWINREDYMEEG 379
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 46.8 bits (106), Expect = 8e-06
Identities = 21/68 (30%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIK--IKIIAPPERKYSVWIGGSILASLSTFQQM 321
V++GG+ PG+++R+++E+ PS+I I++I PP + W G ++++LS F
Sbjct: 396 VLTGGSACLPGLSERLERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIFPGP 455
Query: 320 W-ISKEEY 300
W I+++++
Sbjct: 456 WCITRKQF 463
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 44.0 bits (99), Expect = 6e-05
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 16/88 (18%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTI----------------KIKIIAPPERKYSVWI 363
V+SGG+ M+ R+Q+++ + + + ++ +++ P ++++VW
Sbjct: 329 VLSGGSTMFKDFGRRLQRDLKKIVDARVLANNARTGGEITSQPVEVNVVSHPVQRFAVWF 388
Query: 362 GGSILASLSTFQQMWISKEEYDESGPGI 279
GGS+L+S F +KEEY+E G I
Sbjct: 389 GGSVLSSTPEFFASCRTKEEYEEYGASI 416
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 315
+M+GG + PG+ +R++ I + P I ++ + W G S A+ F
Sbjct: 642 LMTGGCSLLPGMNERLECGIRMIRPCGSPINVVRAMDPVLDAWRGASAFAANLNFLGNAF 701
Query: 314 SKEEYDESG 288
+K +YDE G
Sbjct: 702 TKMDYDEKG 710
>At5g43500.2 68418.m05318 expressed protein
Length = 584
Score = 30.7 bits (66), Expect = 0.56
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -3
Query: 485 GGTXMYPGIADRMQKEIXALAPSTIKIKII----APPERKYSVWIGGSILASLSTFQQMW 318
GG + G+ +++ + P T I + + E ++ W GG+IL L ++ W
Sbjct: 490 GGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAILGILDFGREAW 549
Query: 317 ISKEEYDESG 288
I + ++ +G
Sbjct: 550 IERHQWMVNG 559
>At5g43500.1 68418.m05319 expressed protein
Length = 596
Score = 30.7 bits (66), Expect = 0.56
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -3
Query: 485 GGTXMYPGIADRMQKEIXALAPSTIKIKII----APPERKYSVWIGGSILASLSTFQQMW 318
GG + G+ +++ + P T I + + E ++ W GG+IL L ++ W
Sbjct: 502 GGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAILGILDFGREAW 561
Query: 317 ISKEEYDESG 288
I + ++ +G
Sbjct: 562 IERHQWMVNG 571
>At3g20270.2 68416.m02568 lipid-binding serum glycoprotein family
protein similar to SP|P17213 Bactericidal
permeability-increasing protein precursor (BPI) {Homo
sapiens}; contains Pfam profile PF02886: LBP / BPI /
CETP family, C-terminal domain
Length = 515
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKII 396
+ G + +Y G+ D QK I + T+ KI+
Sbjct: 209 INGGASWLYQGVVDAFQKMIISTVEKTVSTKIV 241
>At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family
protein similar to SP|P17213 Bactericidal
permeability-increasing protein precursor (BPI) {Homo
sapiens}; contains Pfam profile PF02886: LBP / BPI /
CETP family, C-terminal domain
Length = 722
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 494 VMSGGTXMYPGIADRMQKEIXALAPSTIKIKII 396
+ G + +Y G+ D QK I + T+ KI+
Sbjct: 416 INGGASWLYQGVVDAFQKMIISTVEKTVSTKIV 448
>At3g24210.1 68416.m03038 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 607
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 450 DAEGDXRPRALDHQDQDHRSPREEVLRMDRWIHPGFPV 337
D E +P+AL H S ++ LR W+ P FP+
Sbjct: 423 DNEHYRKPKALVSDKTRHESEYKKGLRPVLWLSPNFPL 460
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,973,110
Number of Sequences: 28952
Number of extensions: 167424
Number of successful extensions: 444
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -