Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31966
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26667.2 68418.m03158 uridylate kinase / uridine monophosphat... 138 3e-33
At5g26667.1 68418.m03157 uridylate kinase / uridine monophosphat... 138 3e-33
At3g60180.2 68416.m06721 uridylate kinase, putative / uridine mo... 123 8e-29
At3g60180.1 68416.m06720 uridylate kinase, putative / uridine mo... 123 8e-29
At4g25280.1 68417.m03636 adenylate kinase family protein contain... 118 2e-27
At5g47840.1 68418.m05911 adenylate kinase, chloroplast, putative... 115 2e-26
At5g35170.1 68418.m04168 adenylate kinase family protein contain... 102 2e-22
At2g37250.1 68415.m04570 adenylate kinase family protein contain... 85 3e-17
At5g63400.1 68418.m07958 adenylate kinase identical to adenylate... 83 1e-16
At5g50370.1 68418.m06238 adenylate kinase, putative similar to a... 83 1e-16
At2g39270.1 68415.m04822 adenylate kinase family protein contain... 82 2e-16
At3g01820.1 68416.m00124 adenylate kinase family protein contain... 54 6e-08
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 31 0.35
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr... 31 0.61
At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/oxyge... 30 0.80
At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/oxyge... 30 0.80
At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/oxyge... 30 0.80
At4g25120.1 68417.m03614 UvrD/REP helicase family protein contai... 29 1.9
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 29 1.9
At1g07270.1 68414.m00773 cell division control protein CDC6b, pu... 29 2.5
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 28 3.2
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 27 5.7
At5g49960.1 68418.m06186 expressed protein ; expression supporte... 27 5.7
At5g40870.1 68418.m04963 uracil phosphoribosyltransferase, putat... 27 5.7
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind... 27 5.7
At1g19290.1 68414.m02398 pentatricopeptide (PPR) repeat-containi... 27 5.7
At5g13580.1 68418.m01570 ABC transporter family protein 27 7.5
At2g17110.1 68415.m01974 expressed protein 27 7.5
At1g51500.1 68414.m05796 ABC transporter family protein similar ... 27 7.5
At3g58600.1 68416.m06531 expressed protein hypothetical protein ... 27 9.9
At3g21090.1 68416.m02666 ABC transporter family protein similar ... 27 9.9
At3g05720.1 68416.m00640 importin alpha-1 subunit, putative simi... 27 9.9
>At5g26667.2 68418.m03158 uridylate kinase / uridine monophosphate
kinase / UMP kinase (PYR6) identical to uridylate kinase
/ UMP/CMP kinase SP:O04905 from [Arabidopsis thaliana]
Length = 202
Score = 138 bits (333), Expect = 3e-33
Identities = 71/145 (48%), Positives = 99/145 (68%), Gaps = 3/145 (2%)
Frame = +2
Query: 89 TSKKP-IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMER 265
+ KKP +++VLGGPGSGKGTQC IV YG+THLS GDLLRAE+KSGSE + +++
Sbjct: 10 SGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 69
Query: 266 GELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEE--NIAPVSVIIYFEAS 439
G++VP+E+ + LL++AI + FLIDG+PR + AFE+ I P +++F+
Sbjct: 70 GKIVPSEVTIKLLQKAIQENGNDK--FLIDGFPRNEENRAAFEKVTEIEP-KFVLFFDCP 126
Query: 440 SETLTQRLLGRAASSGRADDNEETI 514
E + +RLLGR + GR DDN ETI
Sbjct: 127 EEEMEKRLLGR--NQGREDDNIETI 149
>At5g26667.1 68418.m03157 uridylate kinase / uridine monophosphate
kinase / UMP kinase (PYR6) identical to uridylate kinase
/ UMP/CMP kinase SP:O04905 from [Arabidopsis thaliana]
Length = 208
Score = 138 bits (333), Expect = 3e-33
Identities = 71/145 (48%), Positives = 99/145 (68%), Gaps = 3/145 (2%)
Frame = +2
Query: 89 TSKKP-IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMER 265
+ KKP +++VLGGPGSGKGTQC IV YG+THLS GDLLRAE+KSGSE + +++
Sbjct: 10 SGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 69
Query: 266 GELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEE--NIAPVSVIIYFEAS 439
G++VP+E+ + LL++AI + FLIDG+PR + AFE+ I P +++F+
Sbjct: 70 GKIVPSEVTIKLLQKAIQENGNDK--FLIDGFPRNEENRAAFEKVTEIEP-KFVLFFDCP 126
Query: 440 SETLTQRLLGRAASSGRADDNEETI 514
E + +RLLGR + GR DDN ETI
Sbjct: 127 EEEMEKRLLGR--NQGREDDNIETI 149
>At3g60180.2 68416.m06721 uridylate kinase, putative / uridine
monophosphate kinase, putative / UMP kinase, putative
similar to uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
(Swiss-Prot:O04905) [Arabidopsis thaliana]
Length = 204
Score = 123 bits (296), Expect = 8e-29
Identities = 63/142 (44%), Positives = 92/142 (64%), Gaps = 2/142 (1%)
Frame = +2
Query: 95 KKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGEL 274
K +V+VLGGPGSGKGTQC +V + +TH S GDLLRAE+KSGSE + +++ G +
Sbjct: 20 KSTVVFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEIKSGSEFGAMIQSMIAEGRI 79
Query: 275 VPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPV--SVIIYFEASSET 448
VP+EI + LL +A+ + FLIDG+PR + F EN+A + + +++F+ E
Sbjct: 80 VPSEITVKLLCKAMEESGNDK--FLIDGFPRNEENRNVF-ENVARIEPAFVLFFDCPEEE 136
Query: 449 LTQRLLGRAASSGRADDNEETI 514
L +R++ R + GR DDN ETI
Sbjct: 137 LERRIMSR--NQGREDDNIETI 156
>At3g60180.1 68416.m06720 uridylate kinase, putative / uridine
monophosphate kinase, putative / UMP kinase, putative
similar to uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
(Swiss-Prot:O04905) [Arabidopsis thaliana]
Length = 204
Score = 123 bits (296), Expect = 8e-29
Identities = 63/142 (44%), Positives = 92/142 (64%), Gaps = 2/142 (1%)
Frame = +2
Query: 95 KKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGEL 274
K +V+VLGGPGSGKGTQC +V + +TH S GDLLRAE+KSGSE + +++ G +
Sbjct: 20 KSTVVFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEIKSGSEFGAMIQSMIAEGRI 79
Query: 275 VPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPV--SVIIYFEASSET 448
VP+EI + LL +A+ + FLIDG+PR + F EN+A + + +++F+ E
Sbjct: 80 VPSEITVKLLCKAMEESGNDK--FLIDGFPRNEENRNVF-ENVARIEPAFVLFFDCPEEE 136
Query: 449 LTQRLLGRAASSGRADDNEETI 514
L +R++ R + GR DDN ETI
Sbjct: 137 LERRIMSR--NQGREDDNIETI 156
>At4g25280.1 68417.m03636 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 249
Score = 118 bits (284), Expect = 2e-27
Identities = 57/138 (41%), Positives = 91/138 (65%), Gaps = 1/138 (0%)
Frame = +2
Query: 104 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPN 283
I +VLGGPGSGKGTQC+KIV +G HLS GDLLR E+ +E + +++ G++VP+
Sbjct: 45 ITFVLGGPGSGKGTQCEKIVETFGLQHLSAGDLLRREIAMHTENGAMILNLIKDGKIVPS 104
Query: 284 EIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENI-APVSVIIYFEASSETLTQR 460
E+ + L+++ + + +++ FLIDG+PR + +AFE I A V+++F+ E + +R
Sbjct: 105 EVTVKLIQKEL--ESSDNRKFLIDGFPRTEENRVAFERIIRADPDVVLFFDCPEEEMVKR 162
Query: 461 LLGRAASSGRADDNEETI 514
+L R + GR DDN T+
Sbjct: 163 VLNR--NQGRIDDNITTM 178
>At5g47840.1 68418.m05911 adenylate kinase, chloroplast, putative /
ATP-AMP transphosphorylase, putative similar to
SP|P43188 Adenylate kinase, chloroplast (EC 2.7.4.3)
(ATP-AMP transphosphorylase) {Zea mays}; contains Pfam
profile PF00406: Adenylate kinase
Length = 283
Score = 115 bits (277), Expect = 2e-26
Identities = 55/122 (45%), Positives = 76/122 (62%)
Frame = +2
Query: 107 VWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNE 286
+ + G P SGKGTQC+ I KYG H+S GDLLRAE+ SGSE + ME+G+LVP+E
Sbjct: 67 IMISGAPASGKGTQCELITHKYGLVHISAGDLLRAEIASGSENGRRAKEHMEKGQLVPDE 126
Query: 287 IVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRLL 466
IV+ ++K+ + E KG+L+DGYPR SQ A + + I E E L +R++
Sbjct: 127 IVVMMVKDRLSQTDSEQKGWLLDGYPRSASQATALKGFGFQPDLFIVLEVPEEILIERVV 186
Query: 467 GR 472
GR
Sbjct: 187 GR 188
>At5g35170.1 68418.m04168 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 588
Score = 102 bits (244), Expect = 2e-22
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Frame = +2
Query: 107 VWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNE 286
V + G P SGKGTQC+ IV K+G H+STGDLLRAEV SG++ K M G LVP+E
Sbjct: 82 VMISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSSGTDIGKRAKEFMNSGSLVPDE 141
Query: 287 IVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEE-NIAPVSVIIYFEASSETLTQRL 463
IV+ ++ + + G+L+DG+PR +Q + ++ N+ P + I + E L R
Sbjct: 142 IVIAMVAGRLSREDAKEHGWLLDGFPRSFAQAQSLDKLNVKP-DIFILLDVPDEILIDRC 200
Query: 464 LGR 472
+GR
Sbjct: 201 VGR 203
>At2g37250.1 68415.m04570 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 284
Score = 85.0 bits (201), Expect = 3e-17
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Frame = +2
Query: 104 IVWV-LGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVP 280
+ WV LG PG GKGT ++ G H++TGDL+R E+ S ++ L+ I+ +G+LV
Sbjct: 52 VQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQGKLVS 111
Query: 281 NEIVLDLLKEAILA-RAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQ 457
+EI++DLL + + A A GF++DG+PR Q + + + +++ + E L
Sbjct: 112 DEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEILGD-VTDIDLVVNLKLPEEVLVD 170
Query: 458 RLLGRAASS 484
+ LGR S
Sbjct: 171 KCLGRRTCS 179
>At5g63400.1 68418.m07958 adenylate kinase identical to adenylate
kinase (ATP-AMP transphosphorylase) [Arabidopsis
thaliana] SWISS-PROT:O82514
Length = 246
Score = 83.0 bits (196), Expect = 1e-16
Identities = 48/132 (36%), Positives = 75/132 (56%), Gaps = 6/132 (4%)
Frame = +2
Query: 116 LGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEIVL 295
+G PGSGKGTQ + +Y HLSTGD+LRA V S + ME+GELV +++V+
Sbjct: 39 IGPPGSGKGTQSPVVKDEYCLCHLSTGDMLRAAVASKTPLGVKAKEAMEKGELVSDDLVV 98
Query: 296 DLLKEAILARAEESKGFLIDGYPREKSQGIAFEENI----APVSVIIYFEASSETLTQRL 463
++ EA + + + KGF++DG+PR +Q +E + + ++ F L +R+
Sbjct: 99 GIIDEA-MNKPKCQKGFILDGFPRTVTQAEKLDEMLKRRGTEIDKVLNFAIDDAILEERI 157
Query: 464 LGR--AASSGRA 493
GR SSGR+
Sbjct: 158 TGRWIHPSSGRS 169
>At5g50370.1 68418.m06238 adenylate kinase, putative similar to
adenylate kinase (ATP-AMP transphosphorylase)
[Arabidopsis thaliana] SWISS-PROT:O82514
Length = 248
Score = 83.0 bits (196), Expect = 1e-16
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 6/132 (4%)
Frame = +2
Query: 116 LGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEIVL 295
+G PGSGKGTQ I ++ HLSTGD+LRA V + + M++GELV +++V+
Sbjct: 40 IGPPGSGKGTQSPVIKDEFCLCHLSTGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVV 99
Query: 296 DLLKEAILARAEESKGFLIDGYPREKSQGIAFEENI----APVSVIIYFEASSETLTQRL 463
++ EA + R + KGF++DG+PR +Q +E + A + ++ F L +R+
Sbjct: 100 GIMDEA-MNRPKCQKGFILDGFPRTVTQAEKLDEMLNRRGAQIDKVLNFAIDDSVLEERI 158
Query: 464 LGR--AASSGRA 493
GR SSGR+
Sbjct: 159 TGRWIHPSSGRS 170
>At2g39270.1 68415.m04822 adenylate kinase family protein contains
Pfam profile: PF00406: adenylate kinase
Length = 295
Score = 81.8 bits (193), Expect = 2e-16
Identities = 42/127 (33%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Frame = +2
Query: 110 WV-LGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNE 286
WV LG PG GKGT ++ + G H++TGDL+R E+ S + L ++ G+LVP+E
Sbjct: 67 WVFLGCPGVGKGTYASRLSSLLGVPHIATGDLVREELSSSGLLSSQLKELVNHGKLVPDE 126
Query: 287 IVLDLLKEAILARAEESK-GFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRL 463
++ LL + + A ++ + G+++DG+PR +Q E + + ++I + E L +
Sbjct: 127 FIISLLSKRLQAGKDKGESGYILDGFPRTVTQA-EILEGVTNIDLVINLKLREEALLAKC 185
Query: 464 LGRAASS 484
LGR S
Sbjct: 186 LGRRICS 192
>At3g01820.1 68416.m00124 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 263
Score = 54.0 bits (124), Expect = 6e-08
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Frame = +2
Query: 104 IVWVL-GGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVP 280
+ WVL G PG+ + +++ H+S G L+R E+ S K + + + +LVP
Sbjct: 63 VQWVLMGAPGAWRHVFAERLSKLLEVPHISMGSLVRQELNPRSSLYKEIASAVNERKLVP 122
Query: 281 NEIVLDLLKEAI-LARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQ 457
+V LL + + A GF++ G PR + Q ++ IA + +++ + S + L
Sbjct: 123 KSVVFALLSKRLEEGYARGETGFILHGIPRTRFQAETLDQ-IAQIDLVVNLKCSEDHLVN 181
Query: 458 R 460
R
Sbjct: 182 R 182
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 31.5 bits (68), Expect = 0.35
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 95 KKPIVWVLGGPGSGKGTQCDKIVAKYGFT 181
K +V ++G GSGK TQ +I+ ++G+T
Sbjct: 19 KNSVVVIIGETGSGKSTQLSQILHRHGYT 47
>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain, weak hit to PF01661: Appr-1-p
processing enzyme family
Length = 912
Score = 30.7 bits (66), Expect = 0.61
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 86 DTSKKPIVWVLGGPGSGKGTQCD 154
D +K+ +V ++G PGSGK T CD
Sbjct: 223 DKAKQIVVLLIGPPGSGKSTFCD 245
>At2g39730.3 68415.m04879 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 441
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 104 IVWVLGGPGSGKGTQCDKIVAKYGFT--HLSTGDL 202
I+ + GG G GK QC+ ++AK G +S G+L
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGEL 194
>At2g39730.2 68415.m04878 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 446
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 104 IVWVLGGPGSGKGTQCDKIVAKYGFT--HLSTGDL 202
I+ + GG G GK QC+ ++AK G +S G+L
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGEL 194
>At2g39730.1 68415.m04877 ribulose bisphosphate
carboxylase/oxygenase activase / RuBisCO activase
identical to SWISS-PROT:P10896 ribulose bisphosphate
carboxylase/oxygenase activase, chloroplast precursor
(RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 474
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 104 IVWVLGGPGSGKGTQCDKIVAKYGFT--HLSTGDL 202
I+ + GG G GK QC+ ++AK G +S G+L
Sbjct: 160 ILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGEL 194
>At4g25120.1 68417.m03614 UvrD/REP helicase family protein contains
Pfam PF00580: UvrD/REP helicase
Length = 1122
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 113 VLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKS-GSERAKCLT 250
V+ GPGSGKG I+A FT +T ++ KS G + AK +T
Sbjct: 265 VIAGPGSGKGLLPSNILA-MTFTKAATSEMRERIGKSAGKKAAKDIT 310
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 29.1 bits (62), Expect = 1.9
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Frame = +2
Query: 104 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPN 283
++ ++G GSGK TQ + + + G+T L G + + + + + E G + +
Sbjct: 488 VLIIVGETGSGKTTQIPQYLHEAGYTKL--GKVGCTQPRRVAAMSVAARVAQEMGGKLGH 545
Query: 284 EIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETL-TQR 460
E+ + E + K ++ DG + G E ++ SVII EA TL T
Sbjct: 546 EVGYSIRFEDCTSEKTILK-YMTDGMLLRELLG---EPDLGSYSVIIVDEAHERTLRTDI 601
Query: 461 LLGRAASSGRA 493
L G RA
Sbjct: 602 LFGLVKDIARA 612
>At1g07270.1 68414.m00773 cell division control protein CDC6b,
putative (CDC6b) identical to CDC6b protein
(GI:18056482) {Arabidopsis thaliana}; contains Prosite
PS00017: ATP/GTP-binding site motif A (P-loop);
identical to cDNA CDC6b GI:18056481
Length = 505
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +2
Query: 83 IDTSKKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTG----DLLRAEVKSGSERAKCLT 250
ID K +++ G PG+GK +K+V + G G D L S S+ +
Sbjct: 144 IDQQKAGSLYICGCPGTGKSLSMEKVVQQVGDWSTQAGLPPVDTLSVNCTSLSKTTDIFS 203
Query: 251 AIMERGELVPNE 286
I+ GE+ P +
Sbjct: 204 KIL--GEIKPGK 213
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 28.3 bits (60), Expect = 3.2
Identities = 28/121 (23%), Positives = 54/121 (44%)
Frame = +2
Query: 104 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPN 283
++ ++G GSGK TQ + + + G+T G + + + + + E G + +
Sbjct: 422 VLVIVGDTGSGKTTQIPQYLHEAGYT--KRGKVGCTQPRRVAAMSVAARVAQEMGVKLGH 479
Query: 284 EIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRL 463
E+ + E + K ++ DG + G E ++A SV+I EA TL+ +
Sbjct: 480 EVGYSIRFEDCTSDKTVLK-YMTDGMLLRELLG---EPDLASYSVVIVDEAHERTLSTDI 535
Query: 464 L 466
L
Sbjct: 536 L 536
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 95 KKPIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLR 208
++P + + G PG+GK T + ++ GDL++
Sbjct: 12 ERPNLLITGTPGTGKSTTASALAEATNLRYICIGDLVK 49
>At5g49960.1 68418.m06186 expressed protein ; expression supported
by MPSS
Length = 824
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 120 EVPDQEREHNATRSSPNTGSLTSRLETCSGLKSKAARRGRNALPLLWKEASLSLMKSS 293
EVPDQERE T + N L + ++ + RR +LPL ++ L L + S
Sbjct: 584 EVPDQEREKKLTDAGLNISKLVN-IKLVHRQGNAVIRRHLESLPLETFDSILILAEQS 640
>At5g40870.1 68418.m04963 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 486
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 86 DTSKKP-IVWVLGGPGSGKGTQCDKIV 163
+ K+P I+ V GG SGK T CD I+
Sbjct: 57 EAPKQPFIIGVSGGTASGKTTVCDMII 83
>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 708
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 104 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELV 277
I+ VLGG G+GK T D + + L L E S K ++A + + +L+
Sbjct: 104 ILAVLGGSGAGKSTLIDALAGRVAEDSLKGTVTLNGEKVLQSRLLKVISAYVMQDDLL 161
>At1g19290.1 68414.m02398 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 745
Score = 27.5 bits (58), Expect = 5.7
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 ERGELVPNEIVLDLLKEAILARAEESKGFLIDGYPR--EKSQGIAFEENIAPVSVIIYFE 433
++G + E V +LLKE L + G L+DGY R + + +N+ + V
Sbjct: 149 KKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGV----- 203
Query: 434 ASSETLTQRLLGRAASSGRADDNEE 508
++ T+ L+ SG+ + E+
Sbjct: 204 RTNTTICNSLINGYCKSGQLVEAEQ 228
>At5g13580.1 68418.m01570 ABC transporter family protein
Length = 727
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 104 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELV 277
I+ VLG GSGK T D + + L L EV + S+ K ++A + + +L+
Sbjct: 121 ILAVLGASGSGKSTLIDALANRIAKGSLKGNVTLNGEVLN-SKMQKAISAYVMQDDLL 177
>At2g17110.1 68415.m01974 expressed protein
Length = 733
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 177 NPYLATILSHCVPFPDPGPPRTHTIGFFD 91
NPYL + +P P P PPR F D
Sbjct: 159 NPYLNSNYGSKLPPPPPSPPREKVWDFLD 187
>At1g51500.1 68414.m05796 ABC transporter family protein similar to
GB:AAF61569 from [Bombyx mori]
Length = 687
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 104 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLL 205
I+ ++G GSGK T D + + + TG+LL
Sbjct: 57 IMAIMGPSGSGKSTLLDSLAGRLARNVIMTGNLL 90
>At3g58600.1 68416.m06531 expressed protein hypothetical protein
F21M11.17 - Arabidopsis thaliana, EMBL:AC003027
Length = 302
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 251 AIMERGELVPNEIVLDLLKEAILARAEESKGFLIDGYPREKSQGIAFEE 397
A + GEL P E V+D + +L R EE IDG R G+ F E
Sbjct: 97 AFLREGELHPVEAVIDSSRYFVL-RVEEK----IDGRVRHAFIGLGFRE 140
>At3g21090.1 68416.m02666 ABC transporter family protein similar to
ATP-binding cassette, sub-family G (WHITE), member 2
GB:NP_036050 from [Mus musculus]
Length = 691
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 104 IVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLL 205
I+ ++G GSGK T D + + + TG+LL
Sbjct: 58 IMAIMGPSGSGKSTLLDSLAGRLARNVVMTGNLL 91
>At3g05720.1 68416.m00640 importin alpha-1 subunit, putative similar
to importin alpha subunit (Karyopherin alpha subunit)
(KAP alpha) SP:O22478 from [Lycopersicon esculentum]
Length = 528
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 23 TEITKLSHTTSILIL*TMAPIDTSKKPIVWVLGGPGSGKGTQCDKIV 163
TE+ +IL+ +P D ++ +VW LG SG +C IV
Sbjct: 139 TEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNI-SGDSPRCRDIV 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,641,328
Number of Sequences: 28952
Number of extensions: 226168
Number of successful extensions: 757
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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