Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31965
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   10.0 

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 386 NSTVTWLIDVFNLLNYIYKKCTSAKTVDLLLISVGSLCIHQ 264
           +S ++W    F+ +NYIY K       D+ + + G +   Q
Sbjct: 101 DSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMTFDQ 141


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 254 THTAGEYTSYLR*STTSQRFLRMY 325
           T    E  SY   +TTS  F+R++
Sbjct: 98  TFFVNEKQSYFHIATTSNEFIRIH 121


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 254 THTAGEYTSYLR*STTSQRFLRMY 325
           T    E  SY   +TTS  F+R++
Sbjct: 98  TFFVNEKQSYFHIATTSNEFIRIH 121


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 254 THTAGEYTSYLR*STTSQRFLRMY 325
           T    E  SY   +TTS  F+R++
Sbjct: 37  TFFVNEKQSYFHIATTSNEFIRIH 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 462 KEATWTCIVMPNPCWAVSVL 403
           + AT+TC V  NP   VS L
Sbjct: 323 RPATFTCNVRGNPIKTVSWL 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,700
Number of Sequences: 438
Number of extensions: 3916
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)