Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31964
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44200.1 68416.m04739 protein kinase family protein contains ...    31   0.61 
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family...    29   1.4  
At3g03950.2 68416.m00414 expressed protein contains Pfam profile...    28   3.2  
At3g03950.1 68416.m00413 expressed protein contains Pfam profile...    28   3.2  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    28   3.2  
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr...    28   3.2  
At5g03890.1 68418.m00365 hypothetical protein                          27   5.7  
At1g12970.1 68414.m01506 leucine-rich repeat family protein            27   5.7  
At5g62270.1 68418.m07818 expressed protein                             27   9.9  
At3g05430.1 68416.m00595 PWWP domain-containing protein contains...    27   9.9  
At3g04610.1 68416.m00493 KH domain-containing protein similar pu...    27   9.9  
At1g52325.1 68414.m05906 hypothetical protein                          27   9.9  

>At3g44200.1 68416.m04739 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 941

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 282 APKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGRPHVVKRQVFY*KRHNA 449
           AP  LH + +  +N +S+     S+  Q S L  N  +  PH V   V +  RH++
Sbjct: 702 APLPLHVEPSHQVNSHSDNK--TSVMSQNSALEKNNSHSHPHPVVDDVIHVIRHSS 755


>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
           protein contains proline-rich domains,
           INTERPRO:IPR000694
          Length = 310

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 92  LAVPHHSSRAPGS*GPKGAW--PHRELPASSPQPSNEGTS*P 211
           +A P  +S  P    P  A   PH++ P S PQP+N  +  P
Sbjct: 1   MATPSPTSSPPSDSNPNSAATPPHQKQPPSPPQPTNPSSPPP 42


>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 424

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 231 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 359
           MKQ V+   LQR  GE  P+   K     I  YSE ++ N I+
Sbjct: 217 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 259


>At3g03950.1 68416.m00413 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 425

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 231 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 359
           MKQ V+   LQR  GE  P+   K     I  YSE ++ N I+
Sbjct: 218 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 260


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = +1

Query: 412  SRGKSFTRNATMQQSTHILIDALMLLSIYYAIFR 513
            S+ ++  ++A+M++   ++ D L LLSIYY++ R
Sbjct: 2332 SKKRALAQSASMEEQ--VIADGLKLLSIYYSVCR 2363


>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 654

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 244 WQSRCCSEWLAKRHLRCCTSNSTLQS-IYTRNRTLQTL 354
           ++  C  +WL   HL C  +  TL S I T N  L++L
Sbjct: 281 YERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSL 318


>At5g03890.1 68418.m00365 hypothetical protein
          Length = 179

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 323 IDWRVELLVQHLRCLFANHSLQHRLCHLL 237
           +++R  + V H+   F+ HS+ H   HLL
Sbjct: 22  LEYREPISVHHILTQFSGHSISHNNTHLL 50


>At1g12970.1 68414.m01506 leucine-rich repeat family protein
          Length = 464

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 153 PTESYLRHHPNPAMRAPPN 209
           P  SY+ HH +PA  APP+
Sbjct: 9   PLLSYVLHHSDPASHAPPS 27


>At5g62270.1 68418.m07818 expressed protein
          Length = 383

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 74  RRSCQQLAVPHHSSRAPGS*GPKGAWPHRELPASSPQPSNE 196
           RRS +   +      A G  G  G W    LP  S +P NE
Sbjct: 326 RRSSEGWKITVEKLGAKGKRGAGGGWKFMSLPDGSSRPLNE 366


>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
           Pfam profile:PF00855 PWWP domain
          Length = 965

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 316 QSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLSRGKSFTRNATMQQST 459
           +S+Y   +T + L+ + LR+    ++    TL   KS+T+   ++ ST
Sbjct: 327 RSVYCLMKTHEPLNRAPLRVPLSGSLVSAETLGNPKSYTKAMNVKDST 374


>At3g04610.1 68416.m00493 KH domain-containing protein similar
           putative nucleic acid binding protein GB:CAB39665
           [Arabidopsis thaliana]; Pfam HMM hit: KH domain family
           of RNA binding proteins
          Length = 577

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +3

Query: 174 HHPNPAMRAPPNHD--YRDTLMKQKVAESVLQRVV---GEEAPKVLHKQFNSPI 320
           H+P P M+ PP HD  Y    M+Q   E    + +   G E P  +H     P+
Sbjct: 400 HNPPPYMQPPPRHDSYYPPPEMRQPPMEKQPHQGISAYGREPPMNVHVSSAPPM 453


>At1g52325.1 68414.m05906 hypothetical protein
          Length = 145

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 286 LRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQLTAI 393
           L CCT   T +S Y  + T  +L   K    QL+ +
Sbjct: 31  LECCTEEKTYRSFYVEDSTSSSLIFLKTLFLQLSEL 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,669,777
Number of Sequences: 28952
Number of extensions: 256634
Number of successful extensions: 743
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)