Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31960
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   3.8  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   6.7  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   6.7  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   8.9  

>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 244 FSA*FPTETFPVSVVEYNWN*SHEGVSSHRPRSTA 348
           FS   PT  FP S    NW   H+ +S++   +T+
Sbjct: 279 FSMIDPTSGFPSSTASGNWEVFHDFMSTYASTTTS 313


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 22  SHSLGLDVAILCNNPYQKKILMLRRLHITCQSILYDKSL 138
           S+ + L   I C+NPY K++ +   L ++C     D SL
Sbjct: 336 SYPIALQCLIYCSNPYFKRLEL--ALKVSCAYGHIDSSL 372


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 154 VIRDRTDFCHIRYSDTLYEDV 92
           ++ D  DFC I Y+D  ++D+
Sbjct: 197 LLEDEEDFCIICYADYAFDDI 217


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 13  TDHSHSLGLDVAILCNNPYQKKILMLRRLHITCQS-ILYDK 132
           T+ S  LG    +L N     +IL + R+HI C S +LY +
Sbjct: 420 TERSEQLG---KLLLNGISDMEILTIERMHIPCLSRMLYKR 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,557
Number of Sequences: 5004
Number of extensions: 35622
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)