Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31960
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 115 SDTLYEDVATLVFSFGRDYYIGLQRLIPSYGYGQW 11
           SD  Y+   + +F+  +D Y  L+  +  YGYGQW
Sbjct: 4   SDRRYDRKRSFLFTQDKDRY--LKAGLKKYGYGQW 36


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 306  KPRGCELTQAKINCVIQ*AHEHIIHHSIFKFLYEPTGNVSNCKI*YKVFY 455
            KP+   L Q  +   I    E ++HHS  KF+ +    +  C +   +FY
Sbjct: 1845 KPKKPLLKQFSLPAKIGQLSEDLVHHSPEKFIRDKQTEMQECVLEISLFY 1894


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,355,300
Number of Sequences: 59808
Number of extensions: 252786
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)