Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31960
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          25   0.35 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          25   0.35 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          25   0.35 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          25   0.35 
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          25   0.35 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.35 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    25   0.35 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          25   0.61 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.9  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 142 RTDFCHIRYSDTLYED 95
           RT  CH RY D+ +ED
Sbjct: 226 RTSSCHSRYEDSRHED 241


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 142 RTDFCHIRYSDTLYED 95
           RT  CH RY D+ +ED
Sbjct: 226 RTSSCHSRYEDSRHED 241


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 142 RTDFCHIRYSDTLYED 95
           RT  CH RY D+ +ED
Sbjct: 226 RTSSCHSRYEDSRHED 241


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 142 RTDFCHIRYSDTLYED 95
           RT  CH RY D+ +ED
Sbjct: 226 RTSSCHSRYEDSRHED 241


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 142 RTDFCHIRYSDTLYED 95
           RT  CH RY D+ +ED
Sbjct: 226 RTSSCHSRYEDSRHED 241


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 142 RTDFCHIRYSDTLYED 95
           RT  CH RY D+ +ED
Sbjct: 226 RTSSCHSRYEDSRHED 241


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 142 RTDFCHIRYSDTLYED 95
           RT  CH RY D+ +ED
Sbjct: 226 RTSSCHSRYEDSRHED 241


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 142 RTDFCHIRYSDTLYED 95
           RT  CH RY D  +ED
Sbjct: 226 RTSSCHSRYEDLRHED 241


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 63  SLPKENTNVATSSYNVSEYLI*QKSVRSRITRPRDAI 173
           ++PKE+T   T++ NVS       S  S++  PR ++
Sbjct: 708 NVPKESTQSLTTTGNVSYLTTNNTSNNSQLQIPRASL 744


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,334
Number of Sequences: 438
Number of extensions: 2539
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)