Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31956
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6FCL6 Cluster: Putative uncharacterized protein; n=2; ...    35   0.96 
UniRef50_Q6QGD5 Cluster: Portal protein; n=1; Enterobacteria pha...    33   3.9  
UniRef50_Q4DKL2 Cluster: Putative uncharacterized protein; n=2; ...    32   6.8  

>UniRef50_Q6FCL6 Cluster: Putative uncharacterized protein; n=2;
           Acinetobacter|Rep: Putative uncharacterized protein -
           Acinetobacter sp. (strain ADP1)
          Length = 631

 Score = 35.1 bits (77), Expect = 0.96
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = -2

Query: 431 HKCIDWKNLKWLIEICL-----ALLVLNV*RGLSVHTYDVTADI 315
           H  I+ KN+ W I +CL      + +LNV  GL+VH +D T  I
Sbjct: 8   HYLIENKNMMWSISMCLLAMTLTIFILNVTLGLAVHFFDYTQSI 51


>UniRef50_Q6QGD5 Cluster: Portal protein; n=1; Enterobacteria phage
           T5|Rep: Portal protein - Bacteriophage T5
          Length = 403

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 99  TSGDTYSILEALNKTLSVVLDASIE--YTSADAVSAVT 206
           T+G  YS +E LN+T ++V+D++ E  YT  D  + VT
Sbjct: 34  TTGQAYSKIEILNRTANMVIDSAAECSYTVGDKYNIVT 71


>UniRef50_Q4DKL2 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 506

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 334 YVCTDKPRHTFNTRSAKQISIN-HFRFFQSIHLC-SLVYRIIKLSFN 468
           YVCT  P HT +  + K+  +  H +FF    L  + + R I LSFN
Sbjct: 8   YVCTHSPTHTSHVNTRKRSHVTAHLQFFCLFFLLRNKLQRTITLSFN 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,913,108
Number of Sequences: 1657284
Number of extensions: 7110736
Number of successful extensions: 16832
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16826
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)