Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31956
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      27   1.3  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   2.2  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   2.9  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   3.8  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   6.7  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    25   8.9  

>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -3

Query: 208 DVTADTASADVYSIEASKTTDRVLFSASSIEYVSPLVCTHV*R 80
           ++T  T ++D+YS++        L+ A +IE  +P++ + V R
Sbjct: 386 NITGFTTTSDLYSVQYMLVIKVQLYRARNIEITNPIIVSPVER 428


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 159 LKPLIEFCLALLVLNMCRRLSVPTYDVTADAASS 58
           LK ++  C+A L    C ++S P   +TAD +++
Sbjct: 171 LKHMVAVCIAELKPGSCSKVSSPVSAITADESAT 204


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +1

Query: 316 MSAVTSYVCTDKPRHTFNTRSAKQISINHFRFFQSIHLCSLVYRIIKLS 462
           + + ++  CT+K R     + A    +++F F   + +CS++ +  +LS
Sbjct: 154 IDSASALSCTEKNRALHLEKKALNCLLSYFAFKGKLDICSVILQSYQLS 202


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 331 SYVCTDKPRHTFNTRSAKQISINHFRFFQSIHLCSLVYRIIKLS 462
           +YVC   PRH F   ++  I   H  FFQ I + S + R    S
Sbjct: 71  NYVCEQLPRHPFAKIASSYID-THTLFFQ-ISISSFLCRFSNCS 112


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 382  KQISINHFRFFQSIHLCSLVY--RIIKLSFN 468
            K++    F+    I+LC+L+Y  R IK +F+
Sbjct: 1491 KKLDHERFKILAGINLCNLIYLKRYIKYAFS 1521


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 90  WVQT-SGDTYSILE-ALNKTLSVVLDASIEYT 179
           WV   SG T+ +    LN+TL+ V D S+E T
Sbjct: 32  WVTAASGKTFDVENPGLNETLAPVTDMSVEET 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,549
Number of Sequences: 5004
Number of extensions: 32842
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)