Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31956
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006664-2|AAF39903.1|  346|Caenorhabditis elegans Hypothetical ...    31   0.49 
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    28   4.6  
U21319-1|AAC46673.2|  258|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AC006664-2|AAF39903.1|  346|Caenorhabditis elegans Hypothetical
           protein H24O09.2 protein.
          Length = 346

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 352 PRHTFNTRSAKQISINHFRFFQSIHLCSLV 441
           P   F T +A++    +F FFQ ++ CSLV
Sbjct: 192 PTFPFKTHTAQEFMFQNFNFFQILYKCSLV 221


>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
           spermatogenesis protein15 protein.
          Length = 1219

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 153 VLD-ASIEYTSADAVSAVTSYVGTDKPRHIFNTRSAKQNYRPF*ILLLNTHRLMLYVSCD 329
           VLD A  EY + ++          +K +H FN R  KQ    +    LN  ++    + D
Sbjct: 460 VLDVAGFEYFAVNSFEQFCINFCNEKLQHFFNERILKQEQEMYEAEGLNIQKIEFTDNLD 519

Query: 330 VIRVYRQAAS 359
            I ++ + AS
Sbjct: 520 CIELFEKKAS 529


>U21319-1|AAC46673.2|  258|Caenorhabditis elegans Hypothetical
           protein C30G12.4 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 211 TWVQTSRVTYSTLEALNKTI---GRFRFFY*IHIG*CYMSAVTSYVCTDKPRHTFNTRS 378
           T++ TS V  S L A  ++     R    + +++   ++S      C D  RH F+TRS
Sbjct: 6   TYIHTSAVRLSALGASRESTFFKSRTALIHTVNVANFHVSRQNCRRCLDASRHCFSTRS 64


>AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical
           protein K02F6.1 protein.
          Length = 783

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 19/61 (31%), Positives = 22/61 (36%)
 Frame = +3

Query: 96  QTSGDTYSILEALNKTLSVVLDASIEYTSADAVSAVTSYVGTDKPRHIFNTRSAKQNYRP 275
           + SG +   LE  N     VLDA +   S D  S      G D P      R   Q Y  
Sbjct: 190 RASGASMDPLEYTNLVGEAVLDAKLSNMSTDDWSIFIFLRGMDAPEDALAKRYLMQYYEQ 249

Query: 276 F 278
           F
Sbjct: 250 F 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,966,831
Number of Sequences: 27780
Number of extensions: 180687
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)