Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31955
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   142   4e-35
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   107   7e-25
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    27   2.2  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   2.2  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    27   2.2  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   5.1  
SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyce...    25   6.7  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   6.7  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.9  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.9  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   8.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.9  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   8.9  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  142 bits (343), Expect = 4e-35
 Identities = 70/136 (51%), Positives = 92/136 (67%)
 Frame = +3

Query: 99  WNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 278
           W +V MGPPD I GITEAYKKD   KK+NLG G YRDD GKP+VLPSVR+AE  L S+ L
Sbjct: 40  WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99

Query: 279 NHEYAPISGEATYTDAVAKLAFGEDSPVIKNKSNCTVQTLSGTGALRLGLEFITKHYAKA 458
           + EYAPI+G  ++     KLA+G+    IK++   + Q++SGTGAL +   F+   Y  +
Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157

Query: 459 KEIWLPTPTWGNHPQI 506
           K I++  PTWGNH  +
Sbjct: 158 KTIYVSDPTWGNHKNV 173


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  107 bits (258), Expect = 7e-25
 Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
 Frame = +3

Query: 105 NVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSR-GLN 281
           N++    D I  +   Y +D  PKKVN+ VGAYRDD GKP++LP+V+KA +I+  +   N
Sbjct: 8   NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67

Query: 282 HEYAPISGEATYTDAVAKLAFGEDSPVIKNKSNCTVQTLSGTGALRLGLEFITKHYAK-- 455
           HEY PI+G   +T A A++ F  +  ++      ++Q++SGTGA  L   FI   Y K  
Sbjct: 68  HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127

Query: 456 AKEIWLPTPTWGNH 497
              +++  PTW  H
Sbjct: 128 GAHVYISNPTWPVH 141


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 257 FFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLLVC 150
           F C+ D R N   +LI S CS +   FF   +LLVC
Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 221 FSLIISICS-NTKIYFFRMCVLLV 153
           F+L+  +CS N+K++FFR  VL +
Sbjct: 564 FALVDELCSLNSKLWFFRKSVLTI 587


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 257 FFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLLVC 150
           F C+ D R N   +LI S CS +   FF   +LLVC
Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -2

Query: 476 REPDLLCLSVVFRYELESKAESASAGQCLYSTVAL--IFDDRAVFSKSQFSYSISICGLT 303
           R P+L  L +  R   E+     S     YST +L   F D++V S S  S S ++    
Sbjct: 2   RRPNLDRLRLKSRQGFETSVSKPSTPS--YSTYSLSPTFSDKSVLSPSTMSDSYALSSTY 59

Query: 302 TDGS 291
           T GS
Sbjct: 60  TAGS 63


>SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 178

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 131 YIWRTHLNIVPPGAAGSKACTTNDRVYIIRLEH 33
           ++ +  L I+PPG       TT+D ++ +RL H
Sbjct: 112 FVEKGDLIILPPGIYHRFTTTTDDYIHAMRLFH 144


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = -2

Query: 158 LVCF----CNA*DYIWR--THLNIVPPGAAGSKACTTNDRVYI 48
           LVCF     N  D  W   + +N  PP  AG  A T +D++YI
Sbjct: 215 LVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKLYI 257


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +3

Query: 12  LKKLTTQVLKPNNVDTIVGCTGLRASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLG 191
           L      + KP + D     +G ++ S W++   MG  ++ +  T   K +T  + ++ G
Sbjct: 330 LPSALNNISKPESTDRPNTASGNQSVSAWFSLEPMGQINLTMNFT---KHNTRKRPMDAG 386

Query: 192 VG 197
           +G
Sbjct: 387 LG 388


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/52 (25%), Positives = 21/52 (40%)
 Frame = +3

Query: 105 NVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEI 260
           N     P+  +  T  +  +     V  G  A +   G PFV+P +  A +I
Sbjct: 97  NATNAQPNPTMFSTGQFSTEQGLPNVFFGAAAAQPGSGTPFVMPGIVNAAQI 148


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 64  TIVSTLLGLSTWVVN 20
           TIV  LL + TW+VN
Sbjct: 846 TIVGILLAIGTWIVN 860


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 256 SSAFLTEGKTNGFPSSSLYAPTPRFTFLGCVSFLYASVM 140
           +S+F T   T+  PSSS +  T    +    SFL +SV+
Sbjct: 196 TSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVI 234


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 224 WFSLIISICSNTKIYFFRMCVLLVCFCNA*DYI 126
           W S  +S CS+ KI F       + F N  DYI
Sbjct: 412 WLSEFMSACSDCKIDFIACHWYGIDFSNLQDYI 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,864
Number of Sequences: 5004
Number of extensions: 50353
Number of successful extensions: 143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)