Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31953
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    30   0.24 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   1.7  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   5.1  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   8.9  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    25   8.9  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    25   8.9  

>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -1

Query: 258 LRYLTFQIVNNGLFTFKIKFMYLFTDFHSVFGNCV-SFSLFKSH-----LYTEIFCGHTG 97
           LRY T   + N LF        LF  F+S+ G+ + SF   KSH     LY  I C H  
Sbjct: 308 LRYWTLNNIPNFLFALLSIIPILFALFYSISGSTLHSFRSIKSHLVLSALYLYIGCFHMH 367

Query: 96  IKYYDR 79
            +  +R
Sbjct: 368 TQVLNR 373


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -1

Query: 252 YLTFQIVNNGLFTFKIKFMYLFTDFHSVF--GNCVSFSLFKSHLYTEIF--CGHTGIKYY 85
           +L  +++N  LF F  KF YLFT   S     + +S       L  E+F  C  TG  Y 
Sbjct: 205 FLNDRVIN--LFLFYEKFSYLFTHLLSAIKSRDALSIPSLVLSLQEELFNLCQQTGTFYL 262

Query: 84  DRHVNIL 64
            +H N+L
Sbjct: 263 LQH-NLL 268


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 62  NKILT*RS*YLMPVWPQNISVYKCDLNKEKLTQLPNTLWKSVNKYINFIL 211
           + ILT  S  L      N+  ++ DLN +KL    N  W   N++  F L
Sbjct: 261 SSILTTTSARLALTTDANLKAFQRDLNAKKLHWPKNVEWWKTNEFGGFHL 310


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 122 PKYFVATRASNIMIVMSIFCFMMR 51
           PKY + T  +N++ + ++ CF +R
Sbjct: 602 PKYTMETYPNNVLSLSTVTCFPLR 625


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 139 KQRETDAIAEYTMEIRKQVHKFY 207
           KQRET ++AE  + I ++  KF+
Sbjct: 710 KQRETISVAENDLRICQKARKFF 732


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 346 PQFVSNATIICVYIYFKWCIYMCFPCEAFFTIPNFPDCKQRIIYI 212
           P F+ + T +  Y+ +    +  FP E F TI +FP  K+R++ +
Sbjct: 46  PSFILSGTSLLEYMSY----WFEFP-ELFVTIVDFPTPKERMLAV 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,899
Number of Sequences: 5004
Number of extensions: 47885
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)