Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31953
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0882 + 29061504-29061512,29061852-29061964,29062371-290623... 30 1.3
01_06_1472 - 37609732-37609851,37609883-37610104,37610542-376109... 29 2.2
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453... 29 2.9
08_02_0581 + 18986084-18986176,18986284-18986668,18986779-189868... 28 3.9
06_01_0286 - 2094920-2097805 28 5.1
05_07_0025 - 27134009-27134048,27134770-27134810,27134932-27135594 28 5.1
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 27 6.8
07_03_1085 - 23851852-23853165 27 6.8
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18... 27 8.9
>04_04_0882 +
29061504-29061512,29061852-29061964,29062371-29062398,
29062690-29062734,29063379-29063456,29063573-29063597,
29063690-29063722,29063793-29063914,29064015-29064145,
29064242-29064468,29065175-29065431,29065859-29065945
Length = 384
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 92 LMPVWP-QNISVYKCDLNKEKLTQLPNTLWKSVNKYINFILNVNNPLFTIWKVRYRKECF 268
+MP W QN+ + + D + K T LP + + + L+++NP + K + C
Sbjct: 147 IMPYWMMQNMLLQEGDTVRVKNTTLPKGTYVKLQPHTTDFLDISNPKAILEKTLRKLSCI 206
Query: 269 T 271
T
Sbjct: 207 T 207
>01_06_1472 -
37609732-37609851,37609883-37610104,37610542-37610922,
37612583-37612816,37613589-37613738,37613831-37614016,
37615058-37615120
Length = 451
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -3
Query: 352 YFPQFVSNATIICVYIYFKWCIYM 281
YF FVS+A+I+C+Y++ +Y+
Sbjct: 138 YFFLFVSSASILCIYVFAMSALYI 161
>05_04_0438 +
21244735-21244782,21245089-21245274,21245307-21245384,
21245385-21245678,21246137-21246262,21246935-21247168,
21247534-21248061
Length = 497
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 352 YFPQFVSNATIICVYIYFKWCIYMCFPCE 266
+F FVS++T++C+Y++ +Y+ F E
Sbjct: 249 FFFLFVSSSTLLCIYVFAMSALYIKFLME 277
>08_02_0581 +
18986084-18986176,18986284-18986668,18986779-18986861,
18986966-18987110,18987823-18987951,18988047-18988171,
18988261-18988419,18988503-18988665,18988750-18988875,
18989110-18989471,18989572-18989772,18989873-18989982,
18990079-18990163,18990298-18990426,18990505-18990610,
18990688-18990776,18990885-18991184
Length = 929
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -1
Query: 318 FAFIYILNGVFTCVFLVKHSLRYLTFQIVNNGLFTFKIKFMYLFTDFHSVFGNCVSFSLF 139
+++ + L+ V+ VF+V SL L F NN F F+Y+ F FS
Sbjct: 406 YSYFFALSAVYMIVFVVFGSLIGLNFFKTNNYGIQFVFYFIYINLQIALAFFVAAFFSSV 465
Query: 138 KS 133
K+
Sbjct: 466 KT 467
>06_01_0286 - 2094920-2097805
Length = 961
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 95 MPVWPQN-ISVYKCDLNKE-KLTQLPNTLWKSVNKYINFILNVN 220
+P W Q + + DL++ L QLP+ LW S+ IN L+ N
Sbjct: 442 VPQWLQTQVGMQTLDLHRTGTLGQLPDWLWTSLTSLINLDLSDN 485
>05_07_0025 - 27134009-27134048,27134770-27134810,27134932-27135594
Length = 247
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 204 KFMYLFTD-FHSVFGNCVSFSLFKSHLYTEIFCGHTGIKYYDRHVN 70
+FMY D F +V+ NC + S +Y + C G YY H N
Sbjct: 125 RFMYTDLDQFLTVYVNCSAKSSSLPFIYDLLSCVSGGSSYYRLHKN 170
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -3
Query: 352 YFPQFVSNATIICVYIY-FKW 293
+F FVS+ T++CVY++ F W
Sbjct: 204 FFFMFVSSTTLLCVYVFAFCW 224
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 98 PVWPQNISVYKCDLNKEKLTQLPNTLWKSVNKYINFILNVNNPLF 232
P P N+S+Y CD NK T+ N L +S +K+ +++ N LF
Sbjct: 115 PFKPINVSLYLCD-NKFH-TEALNELLESDDKFGFIVMDGNGTLF 157
>08_01_0025 -
184899-185384,185707-185940,187156-187341,188108-188158
Length = 318
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 352 YFPQFVSNATIICVYIY 302
YF FVS+A I+C+YI+
Sbjct: 84 YFFCFVSSAAILCIYIF 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,644
Number of Sequences: 37544
Number of extensions: 247743
Number of successful extensions: 534
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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