Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31953
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51890| Best HMM Match : BCCT (HMM E-Value=0) 31 0.56
SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_17504| Best HMM Match : BCCT (HMM E-Value=1.4e-14) 30 0.98
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 29 3.0
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.0
SB_27169| Best HMM Match : BCCT (HMM E-Value=0) 29 3.0
SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97) 27 6.9
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 27 6.9
SB_47097| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_51890| Best HMM Match : BCCT (HMM E-Value=0)
Length = 677
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -3
Query: 364 WYLVYFPQ---FVSNATIICVYIYFKWCIYMCFPCEAFFTIPNFPDCKQRI 221
W++V+F ++ N V Y +W I + F +AF N PD KQ +
Sbjct: 322 WFVVFFYDDTWYILNIFCQSVGYYLQWLIQLGFHTDAFAQAGNAPDGKQAV 372
>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 30.7 bits (66), Expect = 0.74
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -1
Query: 255 RYLTFQIVNNG-LFTFKIKFMYLFTDFHSVFGNCVSFSLFKSHLYTEIFCGHTGIKYYDR 79
+++ I NN ++T I Y++T + +G ++ H+ I+ H + YD+
Sbjct: 129 KHIRVHIYNNTYVYTSTIN-TYVYTSTTNTYG----VHIYDKHMRVHIYDKHMRVHIYDK 183
Query: 78 HVNILFYD 55
H+ + YD
Sbjct: 184 HIRVHIYD 191
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -1
Query: 195 YLFTDFHSVFGNCVSFSLFKSHLYTEIFCGHTGIKYYDRHVNILFYD 55
Y++T + +G ++ H+ I+ H + YD+H+ I YD
Sbjct: 23 YVYTSTTNTYG----VHIYDKHMRVHIYDKHMRVHIYDKHIRIHIYD 65
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/39 (23%), Positives = 19/39 (48%)
Frame = -1
Query: 171 VFGNCVSFSLFKSHLYTEIFCGHTGIKYYDRHVNILFYD 55
++ + ++ H+ I+ H + YD+H+ I YD
Sbjct: 81 IYDKHIRVHIYNKHIRVHIYDKHIRVHIYDKHIRIHIYD 119
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/39 (23%), Positives = 19/39 (48%)
Frame = -1
Query: 171 VFGNCVSFSLFKSHLYTEIFCGHTGIKYYDRHVNILFYD 55
++ + ++ H+ I+ H I YD+H+ + YD
Sbjct: 90 IYNKHIRVHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYD 128
Score = 29.1 bits (62), Expect = 2.3
Identities = 8/39 (20%), Positives = 19/39 (48%)
Frame = -1
Query: 171 VFGNCVSFSLFKSHLYTEIFCGHTGIKYYDRHVNILFYD 55
++ + ++ H+ I+ H + YD+H+ + YD
Sbjct: 72 IYDKHIRIHIYDKHIRVHIYNKHIRVHIYDKHIRVHIYD 110
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -1
Query: 144 LFKSHLYTEIFCGHTGIKYYDRHVNILFYD 55
++ H+ I+ H I YD+H+ + YD
Sbjct: 45 IYDKHMRVHIYDKHIRIHIYDKHIRVHIYD 74
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -1
Query: 144 LFKSHLYTEIFCGHTGIKYYDRHVNILFYD 55
++ H+ I+ H + YD+H+ I YD
Sbjct: 54 IYDKHIRIHIYDKHIRVHIYDKHIRIHIYD 83
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/53 (16%), Positives = 24/53 (45%)
Frame = -1
Query: 171 VFGNCVSFSLFKSHLYTEIFCGHTGIKYYDRHVNILFYDADTIGV*RVNDSLY 13
++ + ++ H+ I+ H + YD+H+ + Y+ + +N +Y
Sbjct: 99 IYDKHIRVHIYDKHIRIHIYDKHIRVHIYDKHIRVHIYNNTYVYTSTINTYVY 151
Score = 27.5 bits (58), Expect = 6.9
Identities = 8/39 (20%), Positives = 19/39 (48%)
Frame = -1
Query: 171 VFGNCVSFSLFKSHLYTEIFCGHTGIKYYDRHVNILFYD 55
++ + ++ H+ I+ H I YD+H+ + Y+
Sbjct: 54 IYDKHIRIHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYN 92
>SB_17504| Best HMM Match : BCCT (HMM E-Value=1.4e-14)
Length = 327
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 340 FVSNATIICVYIYFKWCIYMCFPCEAFFTIPNFPDCKQ 227
F+ NA + + Y +W + + F +AF + N PD KQ
Sbjct: 157 FLLNAFVQSIGYYLQWIVQIGFHTDAFAQLGNAPDGKQ 194
>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
Length = 829
Score = 28.7 bits (61), Expect = 3.0
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +2
Query: 119 SVYKCDLNKEKLTQLPNTLWKSVNKYINFILNVNN----PLFTIWKVRYRKECFTRKTHV 286
S+ K DLN KLT +P + ++ K N L NN P + +W++ K F
Sbjct: 546 SLEKLDLNNNKLTSIPAGI-TNLTKLTNLNLENNNISVVPKY-VWQMGCLKVLFLSNNSN 603
Query: 287 NTPFKIYINAN 319
TP K Y N N
Sbjct: 604 LTPTK-YENLN 613
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 168 FGNCVSFSLFKSHL-YTEIFCGHTGIKYYDRHVNILF 61
FG +S +++ + +T IF H GI + RH+ I+F
Sbjct: 3361 FGYLISHPAYENLISHTRIFFSHPGILFLIRHMGIIF 3397
>SB_27169| Best HMM Match : BCCT (HMM E-Value=0)
Length = 583
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 340 FVSNATIICVYIYFKWCIYMCFPCEAFFTIPNFPDCKQ 227
F+ N + + Y +W + + F +AF + N PD KQ
Sbjct: 229 FLLNVFVQSIGYYLQWIVQIGFHTDAFAQLGNAPDGKQ 266
>SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 379 FSLTRHDFNWNLTLYLC*SRLTIRLETSLAESLVLT 486
F R+ FN+ T +LC SR L+ L+E+ ++T
Sbjct: 280 FPDNRNKFNFGTTQFLCFSRAKSTLKAVLSEAEIIT 315
>SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 680
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 222 LFTFKIK-FMYLFTDFHSVFGNCVSFSLFKSHLYTEIFCGHTGIKYYDRH 76
L TFK K FM+L HS+ + ++ L SHL C HT + + D H
Sbjct: 228 LATFKHKSFMHLAFLHHSMLSSDMTMVL-PSHLEVTQGCHHTTLHWDDTH 276
>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
Length = 971
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 37 DSYCVRIIKQNIDMTIIIFDARVATKYFG 123
D Y ++ +N T++IF A+VA K +G
Sbjct: 45 DRYLTDVVHRNGLQTVVIFHAKVAQKSYG 73
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +2
Query: 95 MPVWPQNISVYK-CDLNKE--KLTQLPNTLWKSVNKYINFILNVNNPLFTIWK 244
MP++PQ ++ +K NKE KL + +T+ S K + L + N ++W+
Sbjct: 1087 MPIFPQKMNYFKNVSENKEVAKLLSMLSTVVNSQKKEVITALELFNKYSSVWQ 1139
>SB_47097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 316 CVYIYFKWCIYMCFPCEAFF 257
CV I F WC FP + FF
Sbjct: 162 CVAITFIWCFSAIFPIQRFF 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,035,241
Number of Sequences: 59808
Number of extensions: 331225
Number of successful extensions: 752
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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