Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31953
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein ...    32   0.26 
At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein ...    30   0.80 
At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein ...    29   1.9  
At2g40990.1 68415.m05063 zinc finger (DHHC type) family protein ...    28   4.3  
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ...    27   9.9  
At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 famil...    27   9.9  

>At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 407

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 352 YFPQFVSNATIICVYIYFKWCIYM 281
           YF  FVS+ATI+C+YI+    +Y+
Sbjct: 173 YFFMFVSSATILCIYIFSMSALYI 196


>At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 374

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 352 YFPQFVSNATIICVYIYFKWCIYM 281
           YF  FVS++T++C+YI+    +Y+
Sbjct: 180 YFFMFVSSSTLLCIYIFSMSAVYI 203


>At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 410

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 352 YFPQFVSNATIICVYIYFKWCIYM 281
           +F  FV + T++CVY++   C+Y+
Sbjct: 191 FFFMFVFSTTLLCVYVFAFCCVYI 214


>At2g40990.1 68415.m05063 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 386

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -3

Query: 352 YFPQFVSNATIICVYIY-FKW 293
           YF  F+S +T++C+Y++ F W
Sbjct: 179 YFICFISTSTLLCLYVFVFSW 199


>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 477

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 352 YFPQFVSNATIICVYIY-FKW 293
           +F  F+S +T +C+Y++ F W
Sbjct: 190 FFFMFISTSTTLCIYVFAFSW 210


>At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 319

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +2

Query: 95  MPVWP-QNISVYKCDLNKEKLTQLPNTLWKSVNKYINFILNVNNPLFTIWKVRYRKECFT 271
           MP W  QN+ + + D+ + +   LP   +  +  +    L+++NP   +        C T
Sbjct: 84  MPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHTTDFLDISNPKAILETALRNYSCLT 143

Query: 272 RKTHVNTPF 298
               +  P+
Sbjct: 144 SGDSIMVPY 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,042,197
Number of Sequences: 28952
Number of extensions: 224610
Number of successful extensions: 486
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)