Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31952
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 30 0.23
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 29 0.40
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.69
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 28 0.92
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 1.2
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 1.6
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 2.1
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 2.8
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 26 2.8
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 2.8
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 2.8
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 3.7
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 4.9
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 4.9
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 6.5
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce... 25 6.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 6.5
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 8.5
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 8.5
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 25 8.5
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 25 8.5
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 8.5
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.23
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +1
Query: 46 KKVTQKPRIPDPSESTVHGKEVHVAKQKQTQKEVVGDKEITRKITSTETTEIEHKAQTQE 225
KK+ KP+ S+ T GK+ KQK T+K+ + ++E K + T K+++++
Sbjct: 29 KKLATKPQ---KSKLTKLGKQKQRQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKD 85
Query: 226 RVVEGPV---KPSKPPIF 270
+ PV K P IF
Sbjct: 86 SSKKEPVVVPKKGTPKIF 103
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 29.1 bits (62), Expect = 0.40
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -2
Query: 285 LHFLSEYRWFRRFNWPFHNSLLCLSFMLDLRCFSRSNFTG 166
+H L ++ F+ ++WP ++ L L +L + + FTG
Sbjct: 1971 IHGLKKFMLFKIYDWPIYSIFLALGQILAATAYQLTLFTG 2010
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 28.3 bits (60), Expect = 0.69
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Frame = +1
Query: 139 KEVVGDKEITRKITSTETTEIEHKAQTQERVVEGPVKPSKPPIFTKKMQPCRVFEHEQAR 318
K+++G +T +TT IEH K PP T P E R
Sbjct: 422 KQILGTSSLTH--FQDKTTAIEHSINKSNSKQPPRFKFQLPPRPTSNTLPLEPEEELVTR 479
Query: 319 FEVEFDGEPL-PLIKWYRENFPIKNSPDF 402
+ V DG + I + F + NS +F
Sbjct: 480 YSVSSDGNTVDEAITKQSQTFQLVNSNEF 508
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.9 bits (59), Expect = 0.92
Identities = 17/87 (19%), Positives = 41/87 (47%)
Frame = +1
Query: 88 STVHGKEVHVAKQKQTQKEVVGDKEITRKITSTETTEIEHKAQTQERVVEGPVKPSKPPI 267
ST+ GK+ +K+ + ++ D + + S+ +T + +T ++ + G + PS +
Sbjct: 225 STIEGKKTSTSKEALESESLLSDSDQSMTNISSNSTVSDLNLKTLKKRLRGVLPPSFLTL 284
Query: 268 FTKKMQPCRVFEHEQARFEVEFDGEPL 348
KK R + + + + +GE +
Sbjct: 285 QEKKKLENRGVKKKTSLHKSVIEGEKI 311
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 295 VFEHEQARFEVEFDGEPLPLIKWYRENFPI 384
V+ + E+ F E PL++WY + F +
Sbjct: 87 VYRSNTSASEIHFQAENAPLVQWYSDIFKV 116
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.1 bits (57), Expect = 1.6
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +1
Query: 52 VTQKPRIPDPSES-TVHGKEVHVAKQKQTQKEVVGDKEITRKITSTETTEIEHKAQTQER 228
V K P P + ++HG+ V +++ +++ GDK+ + T + E + A+ +
Sbjct: 11 VLNKENYPFPRRNGSIHGEITDVKRRRLSERNGYGDKKGSSSKEKTSSFE-DELAEYASQ 69
Query: 229 VVEGPVKPSKPPIFTKKMQPCRVFEHEQARFEVEFDGE 342
+ + +K SK + + P E + F+ + D E
Sbjct: 70 LDQDEIKSSKDQQWQRPALPAINPEKDDIYFQ-QIDSE 106
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 2.1
Identities = 17/77 (22%), Positives = 36/77 (46%)
Frame = +1
Query: 94 VHGKEVHVAKQKQTQKEVVGDKEITRKITSTETTEIEHKAQTQERVVEGPVKPSKPPIFT 273
++ K+K+ QK+ ++ I +K E ++ + + Q+R E ++ + I
Sbjct: 67 IYNGSAEAGKEKKLQKQRAQEERIRQK----EAERLKREKERQQREQEKKLR-EQEKIAA 121
Query: 274 KKMQPCRVFEHEQARFE 324
KKM+ E E+ R +
Sbjct: 122 KKMKELEKLEKERIRLQ 138
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 337 GEPLPLIKWYRENFPIKNSPDFQIHTFSTKSILIIRQVFVEDSA 468
GEP ++ + NF +N + F T +++ ++F D A
Sbjct: 467 GEPNAILTSFNRNFRSRNDGNPSTMNFLTSPVIVAAKIFSSDLA 510
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 2.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 459 FDKHLSYDQYRLGTKCMNLEVRRVFNR 379
FDKH + ++ G KC+ + +FN+
Sbjct: 413 FDKHFTEQRHIYGLKCLGISPSPLFNQ 439
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 91 TVHGKEVHVAKQKQTQKEVVGDKEITRKITSTETTEIEHKAQTQER---VVEGPVKPSKP 261
T K H+ Q+Q + KE+T++ S + ++ K + ++ +++ P P
Sbjct: 444 TNSAKNEHIRSQRQHKTHAAPSKELTKESLSNDQLSVKEKRRHHKKAPTLIQNLNSPRTP 503
Query: 262 PIFTK 276
I K
Sbjct: 504 KIVGK 508
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 2.8
Identities = 20/92 (21%), Positives = 36/92 (39%)
Frame = -2
Query: 432 YRLGTKCMNLEVRRVFNREILPIPFNQRQGFAIELNFESSLFMFKHTAGLHFLSEYRWFR 253
Y G K NLE + I + + G +I++N S+ + A Y W
Sbjct: 1022 YSPGPKKSNLEANGIIGNVISGVFAAESSGVSIDVNKRLSMLLTMQDALQTLFLSYSWHI 1081
Query: 252 RFNWPFHNSLLCLSFMLDLRCFSRSNFTGYFF 157
R ++ S + ++ L+ S S ++F
Sbjct: 1082 RSSYADKTSKVFMNDSSVLKEASLSGLKEFYF 1113
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 116 TCTSLPCTVDSEGSGILG 63
TC+ LPC VD +G+ G
Sbjct: 287 TCSGLPCYVDPRENGVQG 304
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 278 FLVNIGGFEGLTGPSTT 228
+L +GG+E +T PSTT
Sbjct: 507 YLFTVGGYEEITEPSTT 523
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 4.9
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 18 RGSNGTKGAK---EGDSKAKNTGSFGIDRARQRSARCETKTNSE 140
RG NG + K EGDSK+ +D R+ S + ++ N +
Sbjct: 49 RGKNGYENRKITEEGDSKSSELNDDYLDAHRKSSTKKKSSQNKQ 92
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 6.5
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 103 KEVHVAKQKQTQKEVVGDKEITRKITSTET-TEIEHKAQTQERVVEGPVKPSKPPIFTKK 279
K+ +V K + EV +E+ + S+ T T+IE + V++ P P KPP+ +
Sbjct: 44 KDANVILNKSVKMEV---EEVNGHVDSSSTETDIEMQ------VIQQPTIPKKPPVSAHR 94
Query: 280 MQP 288
P
Sbjct: 95 RGP 97
>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 288 GLHFLSEYRWFRRFNWPF 235
GLH LS Y+++R W F
Sbjct: 42 GLHLLSHYQYWRILLWQF 59
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 6.5
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +1
Query: 103 KEVHVAKQKQTQKEVVGDKEIT-----RKITSTETTEIEHKAQTQERVVEGPVKPSKPPI 267
K +A +T+ E V +K + R+ S +T+E+E K ++ E KPS P
Sbjct: 1374 KNTKLAAAWRTKYEQVVNKSLEKHNQIRQQLSQKTSELEAKVAECHQLNEQLNKPSATPT 1433
Query: 268 FTKKMQPCRV 297
T + +P V
Sbjct: 1434 ATTQSEPSTV 1443
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 24.6 bits (51), Expect = 8.5
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -2
Query: 498 TSIFSHSSKHSGIFDKHLSYDQYRLGTKCMNLEVRRVFN--REILPIPFNQRQG 343
T + HS SG+ ++ + G+ N +V R REILP P N+ G
Sbjct: 349 TELLFHSGHLSGLAGINMLVNIDPFGSFDENAQVMRYSANAREILPPPLNENSG 402
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +1
Query: 337 GEPLPLIKWYRENFPIKNSPDFQIHTFSTKSILIIRQVFVED 462
GE ++ Y NF +N + H F T ++ VF D
Sbjct: 459 GEKNSIVTSYNRNFTGRNDANPATHAFVTSPDIVTAMVFSGD 500
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 24.6 bits (51), Expect = 8.5
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +1
Query: 46 KKVTQKP-RIPDPSESTVHGKEVHVAKQKQTQKEVVGDKEITRKITSTETTEIEHKAQTQ 222
K + QK + D E V K + K + T KE++ E + + +E K Q
Sbjct: 30 KSIKQKSFQYFDDYEKNVSDKTIQFQKLQMTAKEIIDAFERDSTQRTLQIESLESKIGEQ 89
Query: 223 ER 228
ER
Sbjct: 90 ER 91
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 24.6 bits (51), Expect = 8.5
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +2
Query: 86 NRPCTAKKCTLRNKNKLRK 142
N+PC + CT+++ N +R+
Sbjct: 458 NQPCQSPMCTMKDTNWIRR 476
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 76 DPSESTVHGKE---VHVAKQKQTQKEVVGDKEITRKITSTETTEIEHKAQTQERVVEGPV 246
+P E+ ++ KE V +K +++V D +T + K +T+E E P+
Sbjct: 35 NPEENVMNEKEDEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPL 94
Query: 247 KPSK 258
+ K
Sbjct: 95 EKLK 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,011
Number of Sequences: 5004
Number of extensions: 42465
Number of successful extensions: 112
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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