Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31949
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   2.9  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   6.7  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   8.9  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.9  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +2

Query: 194 KLVTRPLELLFSLVKRENYVSAVSMLNILVF 286
           KL+ +P+++LF+  K ++   ++   N+L+F
Sbjct: 5   KLLLKPVQILFAYAKAKSKEISIKEANLLIF 35


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 120 GKRHFDVNFERHVESDHVVD 61
           GK ++D  FER  E+D ++D
Sbjct: 57  GKTNYDKRFERGSEADELID 76


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 397 PHPSNRNALLLHGRNRQGGGTYP 329
           PHP N   +LL G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 513 AHSPPDVKWLLEPIDIYNVNAPPTLR 436
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,487
Number of Sequences: 5004
Number of extensions: 42649
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)