Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31949
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical ...    28   4.6  
AF099919-2|AAC68794.1|  160|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical
           protein T20H4.2 protein.
          Length = 235

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 165 H*PLSDHILYIKCYIGKRHFD--VNFERHVESDHVVDIM 55
           H  ++DH L  KC++ ++ F+    F  H E DH  +++
Sbjct: 150 HHEMNDHNLNAKCHLCQKSFENKKTFREHCELDHTPEVV 188


>Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 239 RENYVSAVSMLNILVFPLIPICGRTSCESARV 334
           R + +S  S  ++L+ P  PICG + CES  V
Sbjct: 696 RSSIISDKSQHHLLLIPDGPICGPSRCESRPV 727


>AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 239 RENYVSAVSMLNILVFPLIPICGRTSCESARV 334
           R + +S  S  ++L+ P  PICG + CES  V
Sbjct: 696 RSSIISDKSQHHLLLIPDGPICGPSRCESRPV 727


>AF099919-2|AAC68794.1|  160|Caenorhabditis elegans Hypothetical
           protein F40G9.7 protein.
          Length = 160

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 153 SDHILYIKCYIGKRHFDVNFERHVESDHVVDIMTE 49
           S  I++IK Y GK       +R    D VVDI+ E
Sbjct: 46  SPSIVFIKIYFGKNFLFHGCKRDYSLDDVVDIIEE 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,918,774
Number of Sequences: 27780
Number of extensions: 245472
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)