Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31946
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0545 - 4756266-4757510                                           30   0.96 
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413...    27   8.9  

>05_01_0545 - 4756266-4757510
          Length = 414

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 373 CKPS**YLRWRRQCX*VYRTSPR*CASFQ-QLYVPAP 266
           C P+  Y R  RQC   Y   P  CA+FQ + +VP+P
Sbjct: 346 CLPNRPYQRTPRQCAAFYAAPPVDCAAFQCKPFVPSP 382


>03_01_0555 +
           4132630-4132923,4133514-4133771,4134125-4134249,
           4134789-4134990,4135172-4135297,4135404-4135660,
           4135968-4136075,4136142-4136310,4136378-4136543,
           4136967-4136998,4137256-4137579,4137683-4137757,
           4138093-4138162,4138228-4138385,4138872-4139021
          Length = 837

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 352 DTIKRVCKDYHERIARLEXEKFDLXYIV 435
           +T  ++C+ Y E  A  +  KFDL YIV
Sbjct: 643 ETGPKICQKYIECPALFQGRKFDLRYIV 670


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,976,438
Number of Sequences: 37544
Number of extensions: 115540
Number of successful extensions: 254
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)