Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31946
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.2  

>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 352 DTIKRVCKDYHERIARLEXEKFDLXYIVKRKDMEISDLNSQXNDLRGK 495
           D +++  K    +  +LE +  DL   +KRKD+ I+DLN    D + K
Sbjct: 400 DELRKTKKKMQVQYEKLEHQLDDLKVQLKRKDVVIADLNKVVEDYKRK 447


>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 349 EDTIKRVCKDYHERIARLEXEKFDLXYIVKRKDMEISDLNSQ 474
           ED + R  +   +RI RLE    DL  + +R     SD+N++
Sbjct: 22  EDLMTRRFRGLEDRIGRLESTVSDLQLLQRRNGRFFSDINTR 63


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +1

Query: 340 DANEDTIKRVCKDYHERIARLEXE 411
           + +E+ +++V +DY E+IARL+ E
Sbjct: 144 EPDEEQLEQVRRDYEEQIARLQEE 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,959,014
Number of Sequences: 59808
Number of extensions: 122911
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)