Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31946
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    27   5.7  
At5g65180.2 68418.m08199 expressed protein contains Pfam domain,...    27   7.5  
At5g65180.1 68418.m08198 expressed protein contains Pfam domain,...    27   7.5  
At4g02640.2 68417.m00359 bZIP transcription factor family protei...    27   7.5  
At4g02640.1 68417.m00358 bZIP transcription factor family protei...    27   7.5  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    27   9.9  

>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 352 DTIKRVCKDYHERIARLEXEKFDLXYIV 435
           +T  ++C+ Y E  A  +  KFDL Y+V
Sbjct: 674 ETGPKICQKYIEHPALFKGNKFDLRYVV 701


>At5g65180.2 68418.m08199 expressed protein contains Pfam domain,
           PF04818: Protein of unknown function, DUF618
          Length = 311

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 337 DDANEDTIKRVCKDYHERIARLEXEKFDLXYIVK--RKDMEISDLNSQXNDLR 489
           +++NE+T    CK    RI ++E +  D     K  RK+    +L  + N LR
Sbjct: 53  ENSNEETEMNKCKSAVRRIRKMEKDVEDACSTAKDPRKESLAKELEEEENILR 105


>At5g65180.1 68418.m08198 expressed protein contains Pfam domain,
           PF04818: Protein of unknown function, DUF618
          Length = 439

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 337 DDANEDTIKRVCKDYHERIARLEXEKFDLXYIVK--RKDMEISDLNSQXNDLR 489
           +++NE+T    CK    RI ++E +  D     K  RK+    +L  + N LR
Sbjct: 181 ENSNEETEMNKCKSAVRRIRKMEKDVEDACSTAKDPRKESLAKELEEEENILR 233


>At4g02640.2 68417.m00359 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 417

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 331 NIDDANEDTIKRVCKDYHERIARLEXEKFDLXYIVKRKDMEISDLNSQXNDLRGK 495
           ++D+ NE T     +D  ++  R+   +       +RK  + SDL +Q NDL+G+
Sbjct: 206 DLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGE 259


>At4g02640.1 68417.m00358 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 411

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 331 NIDDANEDTIKRVCKDYHERIARLEXEKFDLXYIVKRKDMEISDLNSQXNDLRGK 495
           ++D+ NE T     +D  ++  R+   +       +RK  + SDL +Q NDL+G+
Sbjct: 200 DLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGE 253


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 391 IARLEXEKFDLXYIVKRKDMEISDLNSQXNDLRGKFVKPT 510
           ++ L   K  L  ++++KD EIS+ NS       K VK T
Sbjct: 117 MSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLT 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,905,098
Number of Sequences: 28952
Number of extensions: 87654
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)