Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31945
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 138 3e-34
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 36 0.005
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 29 0.31
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 1.7
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 26 3.8
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 5.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 6.7
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 25 8.9
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.9
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 138 bits (335), Expect = 3e-34
Identities = 67/162 (41%), Positives = 99/162 (61%)
Frame = +1
Query: 31 VPIVIAGKNITEGEPRYQVMPHDHSKKIAKYYYASEKTIEKAIQASVDAQTRWDRTPLTE 210
+P++I GK + Q P +H K +A+Y+ A K +E AI+A++ + W+ P +
Sbjct: 45 IPVIIDGKEVETNTIGEQRCPFEHKKVVARYHRAGAKHVEDAIEAALRGKKVWESLPFAD 104
Query: 211 RVKIWQTAAELMAGAYRQSLNAATILGQSKSVIQAEIDAAAELIDFFRFNVHFLKENSKY 390
R I+ AA L++ YR L AAT++GQ K++ QAEIDA E+IDF RFN + E
Sbjct: 105 RSAIFLKAAHLISTKYRYKLMAATMIGQGKNIWQAEIDAGMEIIDFLRFNTKYASELYAS 164
Query: 391 QPISESPTITKNSLRFRGIDGFIAAISPFNFTAIGGNLAYTP 516
QP +P + N + +R ++GF+ AI+PFNFTAI GNLA P
Sbjct: 165 QPPENTPGVW-NRMEYRPLEGFVYAITPFNFTAIAGNLAAAP 205
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 35.5 bits (78), Expect = 0.005
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +1
Query: 112 IAKYYYASEKTIEKAIQASVDAQTRWDRTPLTERVKIWQTAAELMAGAYRQSLNAATILG 291
IAK Y A EK I+ A++++ +A W + P +E+ ++ AEL + +L A +
Sbjct: 47 IAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEKGELLMKLAEL-TEKHADTLAAIEAMD 105
Query: 292 QSKSVI---QAEIDAAAELIDF 348
K ++ + ++D L+ +
Sbjct: 106 SGKPLVSNARGDVDGTIALLRY 127
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 29.5 bits (63), Expect = 0.31
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 349 FRFNVHFLKENSKYQPISESPTITKN 426
F+F+ H L N QP SESP T N
Sbjct: 51 FQFHKHHLSGNENPQPSSESPYFTNN 76
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 72 LTFCNIFSGNYNWYVFNY 19
LT C I N++W FNY
Sbjct: 482 LTICKILLNNFDWNFFNY 499
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 19 VIEDVPIVIAGKNITEGEPRYQVMPHD-HSKKIAKYYYASEKT 144
V E++PIV+ G + E + + H KK +YY S K+
Sbjct: 110 VCENIPIVLCGNKVDVKERKVKAKAITFHRKKNLQYYDISAKS 152
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -1
Query: 141 FFTGIVIFSYLF*VIMGHHLISWLTFCNIF 52
F+ G ++ Y ++M +S+ FCN+F
Sbjct: 121 FYAGYLVAQYPAAILMQKCRLSYFIFCNVF 150
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 470 LIAAINPSMPRNLKEFLVIVGLSEIG*YFEFSFRKCTLKRKK 345
LIA I P++ N +V+VG I Y +F+ K T KK
Sbjct: 1453 LIADITPTLLENFNSQIVVVG-PVIDLYGKFAAEKFTALMKK 1493
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 214 VKIWQTAAELMAGAYRQSLNAATILGQSK 300
VKIW T + + +Y SL+ A + Q+K
Sbjct: 252 VKIWHTLSYSLIKSYNFSLDRAWCIAQNK 280
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 8.9
Identities = 23/106 (21%), Positives = 42/106 (39%)
Frame = +1
Query: 112 IAKYYYASEKTIEKAIQASVDAQTRWDRTPLTERVKIWQTAAELMAGAYRQSLNAATILG 291
I+ +Y S +TI K + +SVD+ +E +K+ +T + +S G
Sbjct: 420 ISDHYLFSRRTIRKQLYSSVDSNII-SSIWQSEFIKLIKTVPNM------KSAKIDATYG 472
Query: 292 QSKSVIQAEIDAAAELIDFFRFNVHFLKENSKYQPISESPTITKNS 429
I + +N H KE ++PI++ + NS
Sbjct: 473 CDACNIHTRMSTQIVYFKGMPYNEHNYKELDSFEPITKEAWMLGNS 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.131 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,702
Number of Sequences: 5004
Number of extensions: 39226
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -