Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31945
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0811 + 21438848-21439001,21439469-21439662,21439769-214398... 29 2.2
06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261 29 2.2
01_01_0921 + 7275019-7275363,7275422-7276147,7276289-7276346,727... 29 2.9
10_02_0089 - 5138048-5138561,5138864-5139105,5139712-5140079,514... 28 3.9
06_03_0754 + 24190778-24191284,24191735-24191784,24192311-241923... 28 5.1
04_03_0914 + 20788103-20789642,20790036-20790529 27 6.8
01_01_0192 - 1672837-1673181,1673255-1673485,1673854-1674099,167... 27 6.8
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551... 27 8.9
>08_02_0811 +
21438848-21439001,21439469-21439662,21439769-21439897,
21441552-21441671,21441751-21441887,21441969-21442124,
21442565-21442943,21443041-21443157,21443225-21443371
Length = 510
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 133 SEKTIEKAIQASVDAQTRWDRTPLTERVKIWQTAAELM 246
+++ + K ++ + AQ W RTPL +R ++ AA ++
Sbjct: 54 TQEEVNKVMETAKVAQKAWARTPLWKRAELLHKAAAIL 91
>06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261
Length = 183
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 184 RWDRTPLTERVKIWQTAAELMAGAYRQSLNAATILGQSKSVIQAEIDAAAELI 342
R R+PL R AA L AGA ++ + A G S + ++ DAAA+L+
Sbjct: 32 RSSRSPLRRRPAALGCAASLAAGAAKEIADEAGFFGSSGASLR---DAAADLV 81
>01_01_0921 +
7275019-7275363,7275422-7276147,7276289-7276346,
7276773-7276972
Length = 442
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +1
Query: 100 HSKKIAKYYYASEKTIEKAIQASVDAQTRWDRTPLTERVKIWQTAAELMAGAYRQSLNAA 279
H ++A+ AS I AIQ++V+AQT D LT A ++ + + AA
Sbjct: 255 HCVEMAQAIGASHDQILGAIQSAVNAQTSGDIMALTAGAATALRGAAMLRARLHKEIQAA 314
Query: 280 TILG 291
+ G
Sbjct: 315 ALPG 318
>10_02_0089 -
5138048-5138561,5138864-5139105,5139712-5140079,
5140862-5140943
Length = 401
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 55 NITEGEPRYQVMPHDHSKKIAKYYYASEKTIEKAI 159
N TEG + V+PHD + A +Y+ K IE+ I
Sbjct: 128 NRTEGADHFFVVPHDFA---ACFYFQEAKAIERGI 159
>06_03_0754 +
24190778-24191284,24191735-24191784,24192311-24192383,
24192577-24192717,24193635-24194039,24194215-24194319,
24194635-24194775,24195330-24195533,24196206-24196292,
24196689-24196800,24197972-24198015
Length = 622
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +1
Query: 274 AATILGQSKSVIQAEIDAA-AELIDFFRFNVHFLKENSKYQPIS--ESPTITKNSLRFRG 444
AA +LG +V+ AE +A A+L D F +++ + P + +SP +T
Sbjct: 100 AALVLGTLAAVLPAEEEAEDADLRDVLLFL--YIQSYKRLVPRAHKDSPAVTDVWPSTSA 157
Query: 445 IDGFIAAISP 474
DG+++A+SP
Sbjct: 158 FDGYLSALSP 167
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 175 AQTRWDR-TPLTERVKIWQTAAELMAGAYRQSLNAATI 285
A+ WD+ T L R+ W+ + +L AG Y + L+ + +
Sbjct: 163 AKLGWDKVTGLNRRIISWKNSKDLAAGVYCKELDPSGV 200
>01_01_0192 -
1672837-1673181,1673255-1673485,1673854-1674099,
1674247-1674362,1675735-1675891
Length = 364
Score = 27.5 bits (58), Expect = 6.8
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Frame = +1
Query: 94 HDHSKKIAKYYYASEKTIEK-AIQASVDAQTRWDRTPLTERVKIWQTAAELMAGAYRQSL 270
H +KIAKYY E ++ + +++ D+ TE E +A +
Sbjct: 52 HGKHRKIAKYYKKQENLLKDFSEMETMNEIGSLDQNAPTEEELRQMAKGERLAINLSNII 111
Query: 271 NAATILGQ--------SKSVIQAEIDAAAELIDFF--RFNVHFLKENSKYQ-PISE 405
N +G+ S +VI + +D+ +L+ F F H +K+ +KY PI +
Sbjct: 112 NLILFIGKVLASVESLSMAVIASTLDSLLDLLSGFILWFTAHAMKKPNKYSYPIGK 167
>12_02_1088 -
25954506-25954652,25954769-25954918,25955011-25955116,
25955247-25955569,25955656-25955790,25956310-25956444,
25956445-25956525,25956619-25956807,25956935-25957127,
25957244-25957350,25957457-25957531,25957619-25957774,
25957968-25958051,25958152-25958265,25958345-25958440,
25958543-25958633,25958721-25958836,25958934-25959093,
25960390-25960634
Length = 900
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 165 RLNRLFNCFFTGIVIFSYLF*VIMGHHLISWLTFCNIF 52
R+N LF C + G V F ++GH + LTFC+ F
Sbjct: 575 RVNYLFLCCWAGQVGFGGRHAAVLGHRM--GLTFCSGF 610
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,343
Number of Sequences: 37544
Number of extensions: 237139
Number of successful extensions: 604
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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