Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31943
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica... 30 1.1
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 28 3.2
At5g24040.1 68418.m02824 F-box family protein similar to unknown... 28 3.2
At4g30640.1 68417.m04345 F-box family protein (FBL19) contains s... 27 9.9
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 27 9.9
At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containi... 27 9.9
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 27 9.9
At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ... 27 9.9
>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
to auxin response factor 8 GI:4104931 from [Arabidopsis
thaliana]
Length = 811
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Frame = +3
Query: 6 LALSSTVPEFKTTPVDAAFVEKQKKILSLFYNVNEINYEAEYYKVAQDFNIEASKDC--Y 179
L L STVP F ++ DA + +SL + ++ Y QD E
Sbjct: 648 LFLPSTVPRFASSSGDA-----EASPMSL----TDSGFQNSLYSCMQDTTHELLHGAGQI 698
Query: 180 TNMKAYENFMMMYKVGFLPKNLEFSIF--YEKMREEAIALFKL 302
+ +NF+ +YK G + ++L+ S F Y ++REE +F +
Sbjct: 699 NSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAI 741
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +3
Query: 156 IEASKDCYTNMKAYENFMMMYKVGFLPKNLEFSIF---YEKMR--EEAIALFK 299
I +K C KA E F MYK G +P + +S Y K EE ++L++
Sbjct: 228 ITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYE 280
>At5g24040.1 68418.m02824 F-box family protein similar to unknown
protein (gb|AAD22308.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 373
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 341 CFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKES 225
C+ E F++F I + E+R GF K+ E+ ILGK S
Sbjct: 137 CYSEWFELFECISKCEERIGFMGLNREKN-EYMILGKLS 174
>At4g30640.1 68417.m04345 F-box family protein (FBL19) contains
similarity to SKP1 interacting partner 1 GI:10716947
from [Arabidopsis thaliana]
Length = 301
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 371 GNVLIRLLHSYYPALRHRQLR-STCSIRSLSSI 466
GN+ R++ Y L+H ++R ST + R L S+
Sbjct: 210 GNIEARIIGKYMTQLKHLEIRYSTLTARGLDSV 242
>At4g02660.1 68417.m00361 WD-40 repeat family protein /
beige-related contains Pfam PF00400: WD domain, G-beta
repeat; similar to BEIGE (GI:3928547) [Rattus
norvegicus]; lysosomal trafficking regulator - Bos
taurus, EMBL: AF114785
Length = 3471
Score = 26.6 bits (56), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 362 VDSGVACCFVETFKIF 315
+DSG+ CC + TF F
Sbjct: 187 LDSGILCCLIHTFNAF 202
>At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1117
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 75 KKILSLFYNVNEINYEAEYYKVAQDFNIEASKDCYTNMKAYENFMMMYKVGFLPKNLEFS 254
+K+LS FY + E N+ + + + ++ S Y KA+E F G +P ++
Sbjct: 136 EKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYL-QKAFELFKSSRLHGVMPNTRSYN 194
Query: 255 IFYEK--MREEAIALFKLF 305
+ + + ++ ++LF
Sbjct: 195 LLMQAFCLNDDLSIAYQLF 213
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 177 YTNMKAYENFMMMYKVGFLPKNLEFSIFYEKMREE 281
Y ++ EN + + K+ P+NLE +EK+ +E
Sbjct: 517 YVDLPDAENRLKILKIFLTPENLESDFQFEKLAKE 551
>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
DNA polymerase lambda GI:12053869 from [Arabidopsis
thaliana]
Length = 529
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 158 RGQQGLLHKHESLRKFHDDVQGRIPSQEFGILDLLRKNEG 277
+ + L H + K+ DD++ RIP QE ++ L + G
Sbjct: 314 KNEDSLTHAQKLGLKYFDDIKTRIPRQEVQEMEQLLQRVG 353
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,432,815
Number of Sequences: 28952
Number of extensions: 202232
Number of successful extensions: 634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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