Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31940
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   1.3  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   3.8  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    26   3.8  

>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 336 KSKYRYVYITARRPLPLKPYTEIKR-LPKLVD 428
           K K  YV  T +RP+PL+ Y  +K+ + K+VD
Sbjct: 441 KKKNIYVISTLKRPVPLEHYLWVKQNMFKIVD 472


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 33  ACCHHGRSHKCRHERPSKCRHGGKLGC 113
           +CC   +   C  E+PS C +G    C
Sbjct: 270 SCCSQEKKSCCTSEKPSCCSNGKSTVC 296


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 104 TRLQRGQVDRTPRLQEIRKGYKRTTNRRPEQGPEANR 214
           T  +RG +D TPR  E  K          E G EA R
Sbjct: 325 TTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAKR 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,457
Number of Sequences: 5004
Number of extensions: 37592
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)