Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31940
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0318 - 16620177-16620582,16620686-16620765,16620873-166212... 31 0.55
05_02_0006 - 5541290-5541961 30 1.3
07_01_0891 - 7447079-7447330,7447431-7447554,7449571-7449793,744... 29 2.2
01_01_0535 + 3923433-3923932,3924105-3925098 29 2.9
12_01_0003 - 11806-12363,12659-13099 28 3.9
11_01_0004 - 13421-13978,14274-14714 28 3.9
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736... 28 3.9
08_02_0940 - 22822391-22822781,22822875-22823053,22823079-228234... 28 3.9
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 28 5.1
01_03_0205 + 13777918-13778015,13778402-13778624,13779022-137791... 28 5.1
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 27 6.8
04_04_1322 + 32640414-32642327 27 6.8
09_06_0201 - 21545189-21545494,21545593-21545743,21545835-215460... 27 8.9
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 27 8.9
03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537... 27 8.9
>09_04_0318 -
16620177-16620582,16620686-16620765,16620873-16621213,
16621298-16621559
Length = 362
Score = 31.1 bits (67), Expect = 0.55
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -1
Query: 291 ARNCRSRTFHECPRFHNRC-TASEDGRRFASGPCSGLRLVVRLYPFRIS*SRGVLSTCPL 115
AR +T +C C T +E+ RR + LR + ++PF + LS CP
Sbjct: 227 ARTKLKQTEVDCEYLKRCCETLTEENRRLQK-ELAELRALKTVHPFYMHLPATTLSMCPS 285
Query: 114 CSRVYHHDGTCWAS 73
C RV + AS
Sbjct: 286 CERVASNSAPATAS 299
>05_02_0006 - 5541290-5541961
Length = 223
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 110 LQRGQVDRTPRLQEIRKGYKRTTNRRPEQGPEANRRPSSEAVQRL 244
L R +VD+ L+E RKG K+ R+ E+ + PS A+ L
Sbjct: 165 LARARVDKGTDLEEGRKGEKKKEERKSEKANGQSIAPSEAAITPL 209
>07_01_0891 -
7447079-7447330,7447431-7447554,7449571-7449793,
7449891-7449923,7450042-7450144
Length = 244
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +3
Query: 15 TLLTIVACCHHGRSHKCRHERPSKCRHGGKLGCKGGRWTERPGFKKYGKDINE 173
T+L ++ HGR +K + SK RH GK T RP G D E
Sbjct: 132 TVLEALSDRKHGRDNKSGADNGSKSRHSGKRANDVQTKTSRPAVVDDGYDEEE 184
>01_01_0535 + 3923433-3923932,3924105-3925098
Length = 497
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 347 QIRVHNRAPTTAIETLHGDQEAA*TGRRDSSLLGIRGQR 463
++RV A TA+ TL D EAA R + LG++ +R
Sbjct: 432 EVRVTRNAVETAVSTLMNDGEAAQEMRMRAKDLGVKARR 470
>12_01_0003 - 11806-12363,12659-13099
Length = 332
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 261 ECPRFHNRCTASEDGRRFASGPCSGLRLVVRLYPFRIS*SRGVLSTCPLC 112
+C F + TAS RRF G G + + L+ R G + P+C
Sbjct: 97 DCDSFFSTATASFPRRRFLLGESMGGAVALLLHRLRPDFWTGAILVAPMC 146
>11_01_0004 - 13421-13978,14274-14714
Length = 332
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 261 ECPRFHNRCTASEDGRRFASGPCSGLRLVVRLYPFRIS*SRGVLSTCPLC 112
+C F + TAS RRF G G + + L+ R G + P+C
Sbjct: 97 DCDSFFSTATASFPRRRFLLGESMGGAVALLLHRLRPDFWTGAILVAPMC 146
>08_02_1458 - 27270834-27271320,27271752-27271961,27272627-27273624,
27274099-27274195,27274278-27274393,27274465-27274590,
27275123-27275233,27275347-27275428,27275844-27275989,
27276457-27276650,27277277-27277388,27277869-27278001,
27278295-27278437,27278488-27278562,27278830-27278937,
27279072-27279197,27279752-27279836,27280358-27280440,
27280545-27280625,27280709-27280789,27281960-27282034,
27282112-27282498,27282902-27283036
Length = 1396
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +2
Query: 110 LQRGQVDRTPRLQEIRKGYKRTTNRRPEQGPEANRRPSSEAVQRL*KRG 256
+++ + D TPR GY ++ + ++G E +RR ++ + + G
Sbjct: 1306 MKQNRADTTPRSHTFEPGYHSSSGSQYDEGYEGDRRTGERQLRSMRRSG 1354
>08_02_0940 -
22822391-22822781,22822875-22823053,22823079-22823428,
22823522-22823765
Length = 387
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -1
Query: 291 ARNCRSRTFHECPRFHNRC-TASEDGRRFASGPCSGLRLVVRLYPFRIS*SRGVLSTCPL 115
AR +T +C C T +E+ RR + LR + PF + LS CP
Sbjct: 257 ARTKLKQTEVDCEYLKRCCETLTEENRRLHK-ELAELRALKTARPFYMHLPATTLSMCPS 315
Query: 114 CSRVYHHDGTCWAS 73
C RV + T S
Sbjct: 316 CERVASNPATASTS 329
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/41 (21%), Positives = 24/41 (58%)
Frame = +3
Query: 261 REMFGTYSYALFIPLPGVTADDIIVKSKYRYVYITARRPLP 383
+++F + + L + L +T+ +++ + Y+Y++ R P P
Sbjct: 990 KDLFSSILHGLSVELNSITSSELVGLCREIYIYLSDRDPAP 1030
>01_03_0205 +
13777918-13778015,13778402-13778624,13779022-13779198,
13779277-13779437,13779520-13780519,13780923-13781069,
13781149-13781376,13781471-13781628,13781807-13782161
Length = 848
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 369 RRPLPLKPYTEIKRLPKLVDVTQAYWEYEDNEL 467
RRP K + + PKLV++T W+Y N L
Sbjct: 357 RRPPACKRAKDQESYPKLVELTLNNWDYSSNLL 389
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 94 MVVNSAAKGAGGQNAPASRN 153
++VNS+ GAGG ++PA+ N
Sbjct: 169 LLVNSSESGAGGDDSPAASN 188
>04_04_1322 + 32640414-32642327
Length = 637
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 36 CCHHGRSHKCRHERPSKCRHGGKLGCK 116
C HG +C++ SK GG + CK
Sbjct: 352 CISHGGGRRCQYPNCSKGAQGGTMFCK 378
>09_06_0201 -
21545189-21545494,21545593-21545743,21545835-21546072,
21546158-21546365,21546446-21546639,21546721-21546819,
21546886-21546922,21548242-21548775
Length = 588
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 234 CNDYENAGTREMFGTYSY 287
C++ +NA TR + GTY Y
Sbjct: 422 CDNQQNANTRRVVGTYGY 439
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +3
Query: 387 KPYTEIKR----LPKLVDVTQAYWEYEDNELTVRFKYVNSDTNDGDL 515
K Y E K+ L ++ D+T+ E D V KYV D N D+
Sbjct: 415 KAYNEYKQGEPALDRIFDLTRFIPEVRDKATAVHLKYVKGDINFHDV 461
>03_05_1137 +
30652967-30653183,30653281-30653485,30653696-30653786,
30653904-30654046,30654186-30654429,30654536-30654640,
30654985-30655167,30655255-30655459,30655552-30656036
Length = 625
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 291 LFIPLPGVTADDIIVKSKYRYVYITARRPLPLKPY 395
L IP PG T + KS V + + RPL ++PY
Sbjct: 520 LTIPEPGPTVIQTVCKSIKCVVVLISGRPLVVEPY 554
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,593,786
Number of Sequences: 37544
Number of extensions: 278936
Number of successful extensions: 987
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -