Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31940
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_9851| Best HMM Match : Hint (HMM E-Value=1.30321e-43) 32 0.32
SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29) 29 1.7
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 28 5.3
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 28 5.3
SB_32737| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_31229| Best HMM Match : TP2 (HMM E-Value=1.7) 27 6.9
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17) 27 6.9
SB_6577| Best HMM Match : E_raikovi_mat (HMM E-Value=4.4) 27 6.9
SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_47749| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.068) 27 6.9
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.2
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036) 27 9.2
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 27 9.2
SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 32.3 bits (70), Expect = 0.24
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 78 PSKCRHGGKLGCKGGRWTERPGFKKYGKD 164
P + R GG G +GGR PG +KYG D
Sbjct: 523 PPRGRGGGDFGGRGGRGGTTPGKRKYGAD 551
>SB_9851| Best HMM Match : Hint (HMM E-Value=1.30321e-43)
Length = 493
Score = 31.9 bits (69), Expect = 0.32
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 407 LDLRVGFQWQWSARGYVHVSVFAFDDD 327
L R GF W + A+ Y+H SV + D+D
Sbjct: 181 LAYRAGFDWVYRAKAYIHASVKSDDED 207
>SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29)
Length = 420
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 113 QRGQVDRTPRLQEIRKGYKRTTNRRPEQGPE 205
Q GQ P +QE++KG++ T+++ E+ PE
Sbjct: 101 QTGQKQYRPTIQELQKGFEDDTDQQYEELPE 131
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 199 T*SESTTVFGGC-ATIMKTRALVKCSGPTVTRCSYLSLELPLMI 327
T ++ TTVF T+ + A+V C PT S LSL L +++
Sbjct: 316 TTAQVTTVFTSFFLTLERYLAIVHCDNPTARLSSKLSLRLSILV 359
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +1
Query: 97 VVNSAAKGAGGQNAPASRNTERI*TNN*SKT*AGT*SESTTVFGGCATIMKTRALV 264
VV +A G A RNT TN + T AGT TT GG + + AL+
Sbjct: 506 VVQNAVSGGAALAQQAQRNTANAGTNTSTSTTAGT---QTTRPGGDSVVQSLMALL 558
>SB_32737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 282 SYALFIPLPGVTADDIIVKSKYR 350
SY + PL G+TADDI +K K +
Sbjct: 95 SYFIRTPLAGLTADDIPLKGKQK 117
>SB_31229| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 676
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 71 REAQQVPSWW*TRLQRGQVDRTPRLQEIRKGYKRTTNRRPEQGPEANRRPSS 226
+ +++P RL TPR R+ + ++T+ P P A+++P S
Sbjct: 139 KRKREIPPSGKPRLSSTASTATPRTHLPRRAHSKSTSNAPMTEPRASKKPIS 190
>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
Length = 473
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 42 HHGRSHKCRHERPS 83
HH R H CRH PS
Sbjct: 221 HHSRHHHCRHPAPS 234
>SB_6577| Best HMM Match : E_raikovi_mat (HMM E-Value=4.4)
Length = 165
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 24 TIVACCHHGRSHKCRHERPSKCRH 95
T+ A C+H + C H +KC H
Sbjct: 29 TLTAMCNHTLTAMCNHTLTTKCNH 52
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 24 TIVACCHHGRSHKCRHERPSKCRH 95
T+ A C+H + KC H + C H
Sbjct: 37 TLTAMCNHTLTTKCNHTLTTMCNH 60
>SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 143 LQEIRKGYKRTTNRRPEQGPEANRRPSSEAVQRL*KRG-HS*NVRDLQLRAV 295
L I KGY + N +P GP+A S++ VQ RG + VRD+ R++
Sbjct: 287 LTSIEKGYTSSYNAKPVAGPKAWMVYSADPVQSGKLRGCPAGPVRDVPARSL 338
>SB_47749| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.068)
Length = 814
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 276 SRTFHECPRFHNRCTASEDGRRFASGPCSGLRL 178
+R FHEC R R T R F SG + R+
Sbjct: 160 ARGFHECTRIGERSTQGFSARVFVSGLRAAYRI 192
>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2639
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 3 LLFLTLLTIVACCHHGRSHKCRHER 77
LL LL AC HHG + +H+R
Sbjct: 2210 LLNFVLLVAYACYHHGVFERLKHQR 2234
>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1437
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 3 LLFLTLLTIVACCHHGRSHKCRHER 77
LL LL AC HHG + +H+R
Sbjct: 1365 LLNFVLLVAYACYHHGVFERLKHQR 1389
>SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)
Length = 633
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 135 VLSTCPLCSRVYHHD 91
+L+ C LC+RVYH D
Sbjct: 512 ILNPCRLCTRVYHSD 526
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 3 LLFLTLLTIVACCHHGRSHKCRHER 77
LL LL AC HHG + +H+R
Sbjct: 167 LLNFVLLVAYACYHHGVFERLKHQR 191
>SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 670
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 3 LLFLTLLTIVACCHHGRSHKCRHER 77
LL LL AC HHG + +H+R
Sbjct: 585 LLNFVLLVAYACYHHGVFERLKHQR 609
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,551,277
Number of Sequences: 59808
Number of extensions: 327599
Number of successful extensions: 1021
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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