Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31940
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53154-5|AAC25853.1|  347|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL021497-4|CAA16407.1|  386|Caenorhabditis elegans Hypothetical ...    27   8.0  
AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    27   8.0  
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    27   8.0  
AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transpor...    27   8.0  
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    27   8.0  
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    27   8.0  

>U53154-5|AAC25853.1|  347|Caenorhabditis elegans Hypothetical
           protein C33G8.10 protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +3

Query: 21  LTIVACCHH--GRSHKCRHERPSKCRHGGKLGCK 116
           L I   C H    SH CRH R  KC   G + CK
Sbjct: 36  LDISCTCKHRLATSHPCRHCRMLKCMATGMVKCK 69


>U39851-8|AAF99879.1|  937|Caenorhabditis elegans Hypothetical
           protein C23G10.8 protein.
          Length = 937

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 134 TPRLQEIRKGYKRTTNRRPEQGPEANRRPSSEAVQRL*KRGHS 262
           T RLQ IR+    T  R   +GP ++  PS  A     + GHS
Sbjct: 757 THRLQSIRRSLADTAERAETEGPSSSTGPSISAPPIPSRPGHS 799


>U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.8 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +3

Query: 21  LTIVACCHHG--RSHKCRHERPSKCRHGGKLGCK 116
           L I   C H    SH CRH R  KC   G   CK
Sbjct: 36  LVIECTCLHRLPSSHPCRHCRMEKCIATGMTMCK 69


>AL021497-4|CAA16407.1|  386|Caenorhabditis elegans Hypothetical
           protein Y51A2D.8 protein.
          Length = 386

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +3

Query: 18  LLTIVACCHHGRSHKCRHERPSKCRHGGKLGCKGGRWTERPGF-KKYG 158
           L+  V   H G+      +    C   G  GCKGG  T    + KKYG
Sbjct: 184 LVETVYAAHSGKFKSLSDQEVCDCGTEGTPGCKGGSLTLGVQYVKKYG 231


>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 284 TVGPEHFTSARVFIIVAQPPKTVVDSLQVPAQVF 183
           T  P  FT+    ++V QP  TV  + QVP++ F
Sbjct: 425 TGAPVTFTATSTTLMVTQPTVTVSPTHQVPSEPF 458


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 284 TVGPEHFTSARVFIIVAQPPKTVVDSLQVPAQVF 183
           T  P  FT+    ++V QP  TV  + QVP++ F
Sbjct: 425 TGAPVTFTATSTTLMVTQPTVTVSPTHQVPSEPF 458


>AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transporter
           (pgp related)protein 2 protein.
          Length = 761

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 392 GFQWQWSARGYVHVSVFA 339
           G QW W A G+V ++V+A
Sbjct: 193 GHQWPWFASGFVFLTVYA 210


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 284 TVGPEHFTSARVFIIVAQPPKTVVDSLQVPAQVF 183
           T  P  FT+    ++V QP  TV  + QVP++ F
Sbjct: 425 TGAPVTFTATSTTLMVTQPTVTVSPTHQVPSEPF 458


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 284 TVGPEHFTSARVFIIVAQPPKTVVDSLQVPAQVF 183
           T  P  FT+    ++V QP  TV  + QVP++ F
Sbjct: 425 TGAPVTFTATSTTLMVTQPTVTVSPTHQVPSEPF 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,106,989
Number of Sequences: 27780
Number of extensions: 225460
Number of successful extensions: 620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)