Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31940
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   1.9  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   4.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   4.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   4.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.3  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   4.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   4.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   5.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   10.0 

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 45  HGRSHKCRHERPSKCRHGGKLGCKGGRWTERPGFKKY 155
           H R    RHE  +  R+ G+  C   R  E    ++Y
Sbjct: 231 HSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKDRRY 267


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 45  HGRSHKCRHERPSKCRHGGKLGCKGGRWTE 134
           H R    RHE  +  R+ G+  C   R  E
Sbjct: 231 HSRYEDSRHEDRNSYRNDGERSCSRDRSRE 260


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 45  HGRSHKCRHERPSKCRHGGKLGCKGGRWTE 134
           H R    RHE  +  R+ G+  C   R  E
Sbjct: 231 HSRYEDSRHEDRNSYRNDGERSCSRDRSRE 260


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 45  HGRSHKCRHERPSKCRHGGKLGCKGGRWTE 134
           H R    RHE  +  R+ G+  C   R  E
Sbjct: 231 HSRYEDSRHEDRNSYRNDGERSCSRDRSRE 260


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 45  HGRSHKCRHERPSKCRHGGKLGCKGGRWTE 134
           H R    RHE  +  R+ G+  C   R  E
Sbjct: 231 HSRYEDSRHEDRNSYRNDGERSCSRDRSRE 260


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 45  HGRSHKCRHERPSKCRHGGKLGCKGGRWTE 134
           H R    RHE  +  R+ G+  C   R  E
Sbjct: 231 HSRYEDLRHEDRNSYRNDGERSCSRDRSRE 260


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 45  HGRSHKCRHERPSKCRHGGKLGCKGGRWTE 134
           H R    RHE  +  R+ G+  C   R  E
Sbjct: 231 HSRYEDSRHEDGNSYRNDGERSCSRDRSRE 260


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 45  HGRSHKCRHERPSKCRHGGKLGCKGGRWTE 134
           H R    RHE  +  R+ G+  C   R  E
Sbjct: 231 HSRYEDSRHEDRNSYRNDGERSCSRDRSRE 260


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
 Frame = +3

Query: 45  HGRSHKCRHERPSKCRHGGKLGCKGGRWTERPGFKKYGKDINEQLIEXXXXXXXXXXXXX 224
           H    K   ER S+ R+      +   +     ++KYGK   E+  +             
Sbjct: 245 HNEKEKLLEERTSRKRYSRSREREQKSYKNEREYRKYGKTSKERSRDRMERERSKEPKII 304

Query: 225 XXXCN-------DYENAGTREMFGTYSYALFIPLP 308
               N       +Y N   ++++   +Y   IP+P
Sbjct: 305 SSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPVP 339


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -3

Query: 58  WERPWWQH 35
           +E PWW H
Sbjct: 522 YEYPWWSH 529


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -3

Query: 58  WERPWWQH 35
           +E PWW H
Sbjct: 575 YEYPWWSH 582


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 76  GPASAVMVVNSAAKGAGG 129
           GP +AV     AA G GG
Sbjct: 561 GPVAAVAAAAVAAAGVGG 578


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 371 ARGYVHVSVFAFDDDIISGNSRERYEQRVT 282
           AR +  +  F      I GN  +RY Q+++
Sbjct: 11  ARLFFIIGFFNAISGAIKGNDYQRYHQQIS 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,735
Number of Sequences: 438
Number of extensions: 3134
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)