Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31935
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    33   0.12 
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    33   0.12 
AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical ...    29   2.6  
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro...    27   8.0  
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical...    27   8.0  

>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 313 PTPPSTGHLCRR*LLA-LRSNQDFRR*DPSNSRRHCGFDPPGSLCG 447
           PTP    HLC    L  L  ++DF+  +PS++R  C F+    LCG
Sbjct: 143 PTPEDYRHLCALLTLPKLSDHEDFKNWNPSSARVEC-FNKVNQLCG 187


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 313 PTPPSTGHLCRR*LLA-LRSNQDFRR*DPSNSRRHCGFDPPGSLCG 447
           PTP    HLC    L  L  ++DF+  +PS++R  C F+    LCG
Sbjct: 143 PTPEDYRHLCALLTLPKLSDHEDFKNWNPSSARVEC-FNKVNQLCG 187


>AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical
           protein T10B11.6 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 280 GWADPDPHHVMRHIRVRHESSYR 212
           GWA  +P H+ ++I+V ++  YR
Sbjct: 75  GWAGANPKHIDKYIKVYNDEGYR 97


>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
           preproprotein protein.
          Length = 1042

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 343 GRDGQCWAASVSDSVQ 296
           G DGQCW  + SDS Q
Sbjct: 529 GTDGQCWRGNCSDSHQ 544


>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y37D8A.13 protein.
          Length = 1042

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 343 GRDGQCWAASVSDSVQ 296
           G DGQCW  + SDS Q
Sbjct: 529 GTDGQCWRGNCSDSHQ 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,901,055
Number of Sequences: 27780
Number of extensions: 213858
Number of successful extensions: 530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)