Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31935
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ...    28   4.3  
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    27   5.7  
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    27   5.7  
At1g77200.1 68414.m08992 AP2 domain-containing transcription fac...    27   7.5  
At1g06350.1 68414.m00671 fatty acid desaturase family protein si...    27   7.5  
At2g11090.1 68415.m01187 expressed protein                             27   9.9  
At1g06360.1 68414.m00672 fatty acid desaturase family protein si...    27   9.9  

>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
           protein / snRNP family protein contains similarity to
           U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
           sapiens] gi|2708307|gb|AAC51926
          Length = 786

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 261 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPV 398
           GSG+ +P S V      T  A  + S+PS  S AP Q  L+K+  +
Sbjct: 147 GSGATNPTSGV------TMGASTYSSIPSEASAAPSQTLLTKVSSI 186


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 317 RRPALAISAVDDFLRSEATKTFEDETRRIRADT 415
           RRP +    VDD  R E  +  E+E   + A+T
Sbjct: 120 RRPVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 317 RRPALAISAVDDFLRSEATKTFEDETRRIRADT 415
           RRP +    VDD  R E  +  E+E   + A+T
Sbjct: 120 RRPVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152


>At1g77200.1 68414.m08992 AP2 domain-containing transcription factor
           TINY, putative similar to transcription factor TINY
           (GI:1246403)  [Arabidopsis thaliana] similar to TINY
           (GP:1246403) [Arabidopsis thaliana] similar to TINY
           (GP:1246403) [Arabidopsis thaliana]
          Length = 244

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -3

Query: 310 SDSVQLTEDHGWADPDPHHVMRHIRVRHESSYR-PRCRTVNQF--SLREPR 167
           S  V   EDH     D H      RVR +  YR  R RT  ++   +REPR
Sbjct: 12  SSPVPEEEDHHHHQQDSHRTNTKKRVRSDPGYRGVRMRTWGKWVSEIREPR 62


>At1g06350.1 68414.m00671 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 300

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 249 ITW*GSGSAHPWSSVSWTESLTDAAQHWPSLPSM 350
           +TW  + + H W S SW    T     W SL +M
Sbjct: 209 VTWLVNSACHIWGSRSWNTKDTSRNVWWLSLFTM 242


>At2g11090.1 68415.m01187 expressed protein
          Length = 151

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 279 PWSSVSWTESLTDAAQHWPSLPSMTS 356
           PWSS +WT + +  +  W S+ + T+
Sbjct: 38  PWSSTTWTTTRSHYSTPWSSIITSTT 63


>At1g06360.1 68414.m00672 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 249 ITW*GSGSAHPWSSVSWTESLTDAAQHWPSLPSM 350
           +TW  + + H W S SW    T     W SL +M
Sbjct: 208 VTWLVNSACHIWGSRSWKTKDTSRNVWWLSLFTM 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,424,204
Number of Sequences: 28952
Number of extensions: 201323
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)