Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31930
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 29 1.9
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si... 29 2.5
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 4.3
At3g62370.1 68416.m07006 expressed protein 28 4.3
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 4.3
At4g29310.1 68417.m04190 expressed protein 27 5.7
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 5.7
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein... 27 7.5
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine... 27 7.5
At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family... 27 7.5
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si... 27 7.5
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138... 27 7.5
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 289 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 402
LS R W RAK L+Q+ TH+ E T+Y+S ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317
>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 545
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 252 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 136
+P SNS P +VL + A + GD H TT+H W+ET
Sbjct: 5 LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 113 DRAPLPPNRVSNETMKVVVFQRRSRET 33
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 237 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 142
N+ PG + P G NG +RF H+ ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 164 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 27
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At4g29310.1 68417.m04190 expressed protein
Length = 424
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -2
Query: 497 IEGSKSNVAMNAWLPQASYPCGNFSGTSC*KLFILKDR*AVLSQSLCVLNIWIK 336
I G K ++ ++ + + + CG SG K+ + D A LS+++ N W K
Sbjct: 85 ISGKKISLRVSVYAGRTGHTCGVASGKLLGKVEVAVDLAAALSRTVAFHNGWKK 138
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 152 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 57
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
salt-tolerance protein - Arabidopsis thaliana,
PID:e224078
Length = 242
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 342 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSP 229
D+A+ C R V +LA HLR+SLT P ++P
Sbjct: 20 DEAALCNGCDRHVHFANKLAGKHLRFSLTS-PTFKDAP 56
>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
similar to cytidine deaminase (CDD) [Arabidopsis
thaliana] GI:3046700; contains Pfam profile PF00383:
Cytidine and deoxycytidylate deaminase zinc-binding
Length = 293
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 369 AVPMR--TEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVP 247
A PMR H++ S+ F P+ +S L A+ H R ++ P
Sbjct: 2 AQPMRFMLNHIETESYGAFTPQNLSPLINRAIPHTRAQISGSP 44
>At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family
protein / DNA photolyase family protein contains Pfam
domain, PF00875: deoxyribodipyrimidine photolyase
Length = 581
Score = 27.1 bits (57), Expect = 7.5
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 167 WRKRSSPFKTPA*SGSRTLPGGEFDWGGT-SVKE*RRCPKASSARTETSRGAKGQKLA*S 343
++K P P + + PG E WG ++ + + K S E S Q A
Sbjct: 181 FKKLKLPLTLPVPAAKFSSPGSELQWGSVPTLDDLKDYLKESLWEIENSWREMAQASAER 240
Query: 344 RCSVRIGTAKARPIDPLV*RVFSKRCQKS 430
R+G K ++P+V K+ S
Sbjct: 241 VLMERLGNLKESSMEPIVDGSLGKKVDNS 269
>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 429
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -2
Query: 188 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 63
TA + T+ T+G + PA I L P+R++ + + +
Sbjct: 18 TAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59
>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein -related' based on similarity
to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 568
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 503 ADIEGSKSNVAMNAWLPQ 450
AD+ GS NV M AW P+
Sbjct: 122 ADVNGSSHNVLMEAWKPR 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,552,020
Number of Sequences: 28952
Number of extensions: 244561
Number of successful extensions: 670
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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