Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31927
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042...    28   4.3  
10_08_0296 - 16595193-16595222,16595923-16596067,16597387-165974...    27   7.4  
02_01_0088 - 627825-628984,629339-629509,629612-630416                 27   9.8  
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    27   9.8  

>04_04_1657 -
           35102751-35102868,35102987-35103504,35104065-35104211,
           35104289-35106262,35106964-35107089,35107178-35107264,
           35107335-35107424,35107725-35107811,35108248-35108300,
           35109339-35109387
          Length = 1082

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 259 FCFTGKYRHQDVTSSRMNRVTVHTKYALSY*FSMNASRPYKTCDVC 396
           F FT K RH       ++  +  +K AL    S N  +PY+ CD C
Sbjct: 646 FGFTRK-RHNCYNCGLVHCHSCSSKKALRAALSPNPGKPYRVCDSC 690


>10_08_0296 -
           16595193-16595222,16595923-16596067,16597387-16597488,
           16597630-16597685,16598245-16598399,16598755-16598918,
           16599116-16599237,16599542-16599754,16599874-16600023,
           16600909-16600959
          Length = 395

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 185 IPHYKELLNDETQFYHFFCQM 247
           +P +K+L NDE QF   FC +
Sbjct: 275 LPQFKDLPNDEQQFKAAFCYL 295


>02_01_0088 - 627825-628984,629339-629509,629612-630416
          Length = 711

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 235 FLPNAKIMFCFTGKYRHQDVTSSRMNRVTVHTKYALSY*FSMNASRPYKTCDVCS 399
           F+PN  +     GKYR   ++     R+   +  AL+Y  S +AS P    DV S
Sbjct: 468 FIPNGTLFEHIHGKYRTTSISLDARLRIAQESAEALAYLHS-SASPPIVHGDVKS 521


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 275  FPVKQNIILAFGKKNDKIESHHSEVLYNVVFSLLFSILPRKIGATSSSSRAVAIK 111
            F V     LA  +K  K E +  E L  +V+  L    P+K GAT S+ ++ +++
Sbjct: 1229 FKVDHKESLALAEKRLKYECN--EELARLVYDSLKRKFPKKAGATGSNCQSTSVE 1281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,531,644
Number of Sequences: 37544
Number of extensions: 180183
Number of successful extensions: 326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)