Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31926
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1332 + 35758657-35758728,35758959-35760689 31 0.42
08_02_1603 - 28156141-28157025,28157547-28157999 30 1.3
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 29 2.9
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 29 2.9
02_01_0497 + 3607227-3607462,3607600-3607661,3608138-3608286,360... 29 2.9
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 3.9
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 28 3.9
03_02_0286 + 7100342-7100504,7100613-7100719,7102109-7102240,710... 27 6.8
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 27 8.9
>02_05_1332 + 35758657-35758728,35758959-35760689
Length = 600
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/83 (22%), Positives = 35/83 (42%)
Frame = +3
Query: 174 DDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKVNGTGPLYVLTEDHTVYKVTE 353
D FG+K + +E+GS + ++D ++ + G G ED VY +
Sbjct: 472 DSGNATDFGSKREEHSGGDEEGSQNDFRNIEDDIVG-MNTEGNGEEAFQPEDDVVYGDSL 530
Query: 354 EGNKKVAVDGAKDAQQIMLDYSD 422
+A + A DA + + + D
Sbjct: 531 SPADDIAAEAADDASRELEEQQD 553
>08_02_1603 - 28156141-28157025,28157547-28157999
Length = 445
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +3
Query: 105 LYRYKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVID 281
LYR NG A+ D +AS+ D+ LA+F +G D+ DGS+ +G VI+
Sbjct: 48 LYRLPNG-ASDFPDAVARMSASLSDA-LAYFYPLAGRIRQDDHDGSLSIHGQHGAEVIE 104
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 51 LFFVEADLDNGEVKEYKGLYRYKNGTATKMLDDGTSSTASIDDSK-LAFFGAKSGIYVYD 227
LF +++ + V +G + + G++ + L DGT TAS + + LA+ K+ +YV D
Sbjct: 586 LFISDSNHNRIVVTNLEGEFICQIGSSEEGLLDGTFDTASFNRPQGLAYNSKKNILYVAD 645
Query: 228 NEDGSVK 248
E+ +++
Sbjct: 646 TENHALR 652
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 165 ASIDDSKLAFFGAKSGIYVYDNEDGSVKKY 254
ASI+ +K SG ++YDN DGS+ ++
Sbjct: 1041 ASINKNKAKVTDYSSGSFLYDNRDGSLSQH 1070
>02_01_0497 +
3607227-3607462,3607600-3607661,3608138-3608286,
3608418-3608538,3608638-3608793,3609041-3609086,
3609414-3609480,3609553-3609629,3610180-3610249,
3610956-3611014,3611105-3611213,3611552-3611611,
3611701-3611763,3612007-3612131,3612260-3612422,
3612506-3612565,3612802-3612860,3613057-3613138,
3613227-3613290,3613506-3613573,3613648-3613758
Length = 668
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 267 DSVIDIVKVNGTGPLYVLTEDHTVYKVTEEGNKKVAVD 380
DSV+ I + G LY + ED Y++ +GN +D
Sbjct: 273 DSVVTIQGLTPAGYLYAIGEDGKSYELHPDGNSVTMID 310
>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 114 YKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSV 275
Y+ GT + + DD S ++SI + +A + V N + + GT+D +V
Sbjct: 2061 YEPGTGSSVADDNNSPSSSITGTLVALRSTQMITTVLPNANITPNNLGTLDSAV 2114
>08_02_0749 -
20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 156 SSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKVNGT 302
SS DDS A SG+ + N K G + D+V++ NGT
Sbjct: 382 SSANKADDSSTASDTKSSGVTMSINASNPDKSVGGLQDAVVETKHSNGT 430
>03_02_0286 +
7100342-7100504,7100613-7100719,7102109-7102240,
7102383-7102539,7103099-7103220
Length = 226
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 294 NGTGP---LYVLTEDHTVYKVTEEGNKKVAVDGAKDAQQIMLDYSDNVYFYGPDKK 452
+GT P L +T+ V + + GN + A++ D +LD + +YF+ +K
Sbjct: 51 SGTQPDIDLATITDRMEVKRAVQSGNVQEAIEKINDLNPTILDTNPQLYFHLQQQK 106
>06_03_0541 - 21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 273 VIDIVKVNGTGPLYVLTEDHTVYKVTEEGN 362
V++++K+ TGP ++T + +V + +EGN
Sbjct: 992 VLELMKILSTGPEGLVTVNKSVNPIVQEGN 1021
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,607,850
Number of Sequences: 37544
Number of extensions: 206712
Number of successful extensions: 676
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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