Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31926
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_366| Best HMM Match : ResIII (HMM E-Value=0.28)                     28   5.3  
SB_59027| Best HMM Match : UPAR_LY6 (HMM E-Value=0.019)                28   5.3  
SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_13172| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        28   5.3  
SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)           27   6.9  
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)               27   6.9  
SB_12030| Best HMM Match : DUF413 (HMM E-Value=1.5)                    27   6.9  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_12045| Best HMM Match : bZIP_1 (HMM E-Value=4.2)                    27   9.2  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            27   9.2  
SB_49063| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1110

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 75  DNGEVKEYKGLYRYKNGTATKMLDDGTSSTASIDD-SKLAFFGAKSGIYVYDNEDGSVKK 251
           D+ EVKE+   Y  K+G A+K L D       + D  +   F A   +   DNED  +K 
Sbjct: 465 DDLEVKEFISSYFTKSGEASKRLKDRVEKDRRLADFVRNPLFLAMICVVFEDNED-RIKD 523

Query: 252 YGTVDDSVIDIV 287
             T +D   +IV
Sbjct: 524 DLTREDLYNEIV 535


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +3

Query: 126  TATKMLDDGTS-STASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKVNGT 302
            TA  M+ DGT+ S+ S D +               + DG+     + D +    +  NGT
Sbjct: 2655 TAASMITDGTTVSSISTDGTTAVPISTNGATAAPMSTDGTTAAPMSTDGTTAVPMITNGT 2714

Query: 303  GPLYVLTEDHTVYKVTEEGNKKVAV 377
              + ++T+  T   ++ +G   V V
Sbjct: 2715 TAVPMITDGTTAAPISTDGTTAVPV 2739


>SB_366| Best HMM Match : ResIII (HMM E-Value=0.28)
          Length = 1104

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 204  KSGIYVYDNED---GSVKKYGTVDDSVIDIVKVNGTGPLYVLTEDHTVYKVTEEGNKKVA 374
            K G+    +E+     +K+Y  +DD      K   TGP +VLT DH +  +T +  KK  
Sbjct: 1001 KRGVQATPSEELIMARIKRYA-IDDRQKGRTKY--TGPHHVLTVDHVLVMIT-DAEKKCM 1056

Query: 375  VDGAK 389
            V G +
Sbjct: 1057 VCGTQ 1061


>SB_59027| Best HMM Match : UPAR_LY6 (HMM E-Value=0.019)
          Length = 318

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 135 KMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVK 248
           ++ DDGTS+T++  +S+    G ++ +  YD   G ++
Sbjct: 124 RVKDDGTSTTSTSCNSQCISIGGRTTLKQYDGSGGRIQ 161


>SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 141 LDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVID 281
           +DDGT S   IDD   +      G   +D+ D     +  +DD   D
Sbjct: 307 IDDGTDSHDDIDDGTDSHDDIDDGTDDHDDTDDGTDGHDDIDDDTYD 353



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 141 LDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVID 281
           +DDGT S   IDD   +      G   +D+ D     +  +DD   D
Sbjct: 125 IDDGTDSHDDIDDGTDSHDDIDDGTDDHDDIDDGTDSHDNIDDGTDD 171



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 23/88 (26%), Positives = 32/88 (36%)
 Frame = +3

Query: 141 LDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKVNGTGPLYVL 320
           +DDGT S   IDD          G   +DN D     +  +DD       ++     +  
Sbjct: 135 IDDGTDSHDDIDDGTDDHDDIDDGTDSHDNIDDGTDDHDDIDDGKDSHDDIDDGTDDHDD 194

Query: 321 TEDHTVYKVTEEGNKKVAVDGAKDAQQI 404
           TEDH       E +  +  DG  D   I
Sbjct: 195 TEDHDDIDDGTESHDDID-DGTDDHDDI 221


>SB_13172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 204 KSGIYVYDNED---GSVKKYGTVDDSVIDIVKVNGTGPLYVLTEDHTVYKVTEEGNKKVA 374
           K G+    +E+     +K+Y  +DD      K   TGP +VLT DH +  +T +  KK  
Sbjct: 496 KRGVQATPSEELIMARIKRYA-IDDRQKGRTKY--TGPHHVLTVDHVLVMIT-DAEKKCM 551

Query: 375 VDGAK 389
           V G +
Sbjct: 552 VCGTQ 556


>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 54  FFVEADLDNGEVKEYKGLYRYKNGTATKMLDDGTSSTASID 176
           F V+ +++N  ++EYK + R  + T  K LD+  ++   ID
Sbjct: 13  FEVQQEMNNNLIEEYKEVERIISHTTVKNLDEFGNTVNQID 53


>SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)
          Length = 597

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 243 VKKYGTVDDSVIDIVKVNGTGPLYVLTEDHTVYKVTEEGNK 365
           +K+Y  +DD     ++   TGP +VLT DH +  + +  NK
Sbjct: 452 IKRYA-IDDR--QKIRTKYTGPHHVLTVDHVLGMIADAENK 489


>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1252

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 45  IILFFVEADLDNGEVKEYKGLYRYKNGTATKMLDDGTSSTASI 173
           I++ +   +L NG +  Y+G Y     +++ MLD G S+ A++
Sbjct: 206 IMVRWSSPNLLNGWLTGYRGFYSINVSSSSSMLDAGLSTDATL 248


>SB_12030| Best HMM Match : DUF413 (HMM E-Value=1.5)
          Length = 377

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +3

Query: 111 RYKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDI 284
           R  + T++   D+  S TAS++++K    GA + +    N+DG     G  DD+ +++
Sbjct: 62  RNLDSTSSPGPDELKSLTASLEETKDYSVGAAASVDYNGNDDGVDYDDGYYDDNSLNV 119


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 126  TATKMLDDGTS-STASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKVNGT 302
            TA  M+ DGT+ S+ S D +               + DG+     + D +    +  NGT
Sbjct: 1744 TAASMITDGTTVSSISTDGTTAVPISTNGATAAPMSTDGTTAAPMSTDGTTAVPMITNGT 1803

Query: 303  GPLYVLTEDHTVYKVTEEGNKKV 371
              + ++T+  T   ++ +G   V
Sbjct: 1804 TAVPMITDGTTAAPISTDGTTAV 1826


>SB_12045| Best HMM Match : bZIP_1 (HMM E-Value=4.2)
          Length = 220

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 297 GTGPLYVLTEDHTVYKVTEEGNKKVAVDGAKD----AQQIMLDYSDNV 428
           G+GP  + +ED T      E  K+VA    ++      +++LDY D +
Sbjct: 52  GSGPCKLASEDQTCSSTKPERQKRVASSNFQENRTKKSKVILDYEDYI 99


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 115 TKTVRPRKCLMTVQARPHPSTTLNWRSSAPNPVFTFTTTKT 237
           +KT+R R        RP P   +   S  P+P+ + T  KT
Sbjct: 152 SKTIRDRTLSRLPTLRPSPKIDVTKTSRTPSPLLSATPCKT 192


>SB_49063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 66  ADLDNGEVKEYKGLYRYKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNED 236
           ADL + E K YKG    ++    K  DD      + DD++       SG Y  DN+D
Sbjct: 113 ADLTDDEFKSYKGALDDESNDVMKDRDDVIDDDVN-DDTQKDEEDEPSGGYHGDNKD 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,613,495
Number of Sequences: 59808
Number of extensions: 248325
Number of successful extensions: 929
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)