Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31926
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26560.1 68414.m03236 glycosyl hydrolase family 1 protein con...    29   1.4  
At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    28   4.3  
At5g44635.1 68418.m05469 minichromosome maintenance family prote...    27   5.7  
At4g39240.1 68417.m05555 kelch repeat-containing F-box family pr...    27   5.7  
At3g16420.2 68416.m02084 jacalin lectin family protein similar t...    27   5.7  
At3g16420.1 68416.m02083 jacalin lectin family protein similar t...    27   5.7  
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea...    27   5.7  
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf...    27   7.5  
At4g28850.1 68417.m04123 xyloglucan:xyloglucosyl transferase, pu...    27   7.5  
At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodieste...    27   9.9  
At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM do...    27   9.9  
At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr...    27   9.9  

>At1g26560.1 68414.m03236 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966)  [Prunus serotina]
          Length = 510

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 285 VKVNGTGPLYVLTEDHTVYKVTEEGNKKVAVD 380
           VK  G GP    T  HT  K+T+  N  VAVD
Sbjct: 56  VKAEGRGPTIWDTFSHTFGKITDFSNADVAVD 87


>At5g23150.1 68418.m02707 PWWP domain-containing protein identical
           to cDNA putative transcription factor (HUA2) GI:4868119;
           contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 141 LDDGTSSTASIDDSKLAF---FGAKSGIYVYDNE 233
           +DDG+ ST ++ D K       GA+ G + YD E
Sbjct: 345 IDDGSDSTGTVSDIKREIVLGLGARGGNFQYDKE 378


>At5g44635.1 68418.m05469 minichromosome maintenance family protein
           / MCM family protein similar to SP|P97311 DNA
           replication licensing factor MCM6 {Mus musculus};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 831

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = +3

Query: 162 TASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKVNGTGPLYVLTEDHTVY 341
           T + D S+L     K  I  + ++    KKY + +   +DI K+       V  E H + 
Sbjct: 737 TVNKDSSELPGIRQKELIRWFIDQQNEKKKYSSQEQVKLDIKKLRAIIESLVCKEGHLIV 796

Query: 342 KVTEEGNKKVAVDGAKDAQQ 401
              E+     A +  K + Q
Sbjct: 797 LANEQEEAAEAEETKKKSSQ 816


>At4g39240.1 68417.m05555 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 375

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 105 LYRYKNGT--ATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYD 227
           +Y  K GT    ++LD   S  + + D K+  FG+K+ I+V+D
Sbjct: 247 VYDPKEGTLETDELLDTQWSVGSCVIDGKIYTFGSKNRIWVFD 289


>At3g16420.2 68416.m02084 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296;
           contains Pfam profile: PF01419 jacalin-like lectin
           domain
          Length = 298

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 234 DGSVKKYGTVDDSVIDIV--KVNG-TGPLYVLTEDHTVYKVTEEGNKKVAVDGAKD 392
           DG+  K    D SVI ++  K N  T P + L E  TV+++ EEG+K V   G  D
Sbjct: 229 DGTYDKIFGSDGSVITMLRFKTNKQTSPPFGL-EAGTVFELKEEGHKIVGFHGRAD 283


>At3g16420.1 68416.m02083 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296;
           contains Pfam profile: PF01419 jacalin-like lectin
           domain
          Length = 298

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 234 DGSVKKYGTVDDSVIDIV--KVNG-TGPLYVLTEDHTVYKVTEEGNKKVAVDGAKD 392
           DG+  K    D SVI ++  K N  T P + L E  TV+++ EEG+K V   G  D
Sbjct: 229 DGTYDKIFGSDGSVITMLRFKTNKQTSPPFGL-EAGTVFELKEEGHKIVGFHGRAD 283


>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to Will die slowly protein
           (SP:Q9V3J8)[Drosophila melanogaster]
          Length = 511

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 20/73 (27%), Positives = 28/73 (38%)
 Frame = +3

Query: 234 DGSVKKYGTVDDSVIDIVKVNGTGPLYVLTEDHTVYKVTEEGNKKVAVDGAKDAQQIMLD 413
           D SV        +   IV  N T  +Y++T    V K    GN+    +G       +  
Sbjct: 395 DASVNSIHLFPKNTEHIVVCNKTSSIYIMTLQGQVVKSFSSGNR----EGGDFVAACVST 450

Query: 414 YSDNVYFYGPDKK 452
             D +Y  G DKK
Sbjct: 451 KGDWIYCIGEDKK 463


>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 654

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +3

Query: 78  NGEVKEYKGLYRYKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKK 251
           N  V++YKG+ + ++ T+  +  DG    ++ +D         S +Y++ N++ S  K
Sbjct: 491 NNVVRKYKGVCKTRSLTSASLTSDGKHIVSACED---------SNVYIWSNDEESETK 539


>At4g28850.1 68417.m04123 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative contains
           similarity to xyloglucan endotransglycosylase XET2
           GI:8886867 from [Asparagus officinalis]
          Length = 292

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
 Frame = +3

Query: 57  FVEADLDNGEVKEYKGLYRYKNGTATKMLDDGTSSTASIDDSKLA-FFGAKSGI--YVYD 227
           FVEAD     +  +   + + NGT  +++ D   S  S   SK+A  FG+   +   V  
Sbjct: 24  FVEADFSKNFIVTWGKDHMFMNGTNLRLVLD--KSAGSAIKSKVAHLFGSVEMLIKLVPG 81

Query: 228 NEDGSVKKY-----GTVDDSVIDIVKVNGTGPLYVLTEDHTVYKVTEEGNKK 368
           N  G+V  Y     G+  D +      N TG  Y +   HT      +GN++
Sbjct: 82  NSAGTVAAYYLSSTGSTHDEIDFEFLGNATGQPYTI---HTNLYAQGKGNRE 130


>At4g26690.1 68417.m03846 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 759

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +3

Query: 114 YKNGTATKMLDDGTSSTASIDDSKLA----FFGAKSGIY-VYDNEDGSVKKYGTVDDSVI 278
           Y N TATK++   T+S+  +D  K +     +  +  I  + D+    +KK+   D  VI
Sbjct: 526 YSNSTATKVMIQSTNSSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKF--ADAVVI 583

Query: 279 DIVKVNGTGPLYVLTEDHTVYKV 347
             + V      ++ T+ + V K+
Sbjct: 584 QKLSVFPVAQSFITTQTNVVEKL 606


>At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM
           domain-containing protein contains Pfam profile: PF01593
           Flavin containing amine oxidase
          Length = 789

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +3

Query: 180 SKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKVNGTGPLYVLTEDHTVYKVTEE 356
           S  A    +  + V +  + +VK Y  + D +I I K   T  L  LT       +TEE
Sbjct: 41  SSSASSSGRFNVEVVNGSNQTVKSYPGIGDEIITINKEATTEALLALTAGFPADSLTEE 99


>At1g11340.1 68414.m01302 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 901

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 225 DNEDGSVKKYGTVDDSVIDIVKVNGTGPLYVLT 323
           +NED     YG  D SVI    VN TG ++  T
Sbjct: 301 NNEDEVSFTYGVTDASVITRTMVNETGTMHRFT 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,454,890
Number of Sequences: 28952
Number of extensions: 172355
Number of successful extensions: 541
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)