Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31925
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    31   0.077
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    29   0.41 
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    26   3.8  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.7  

>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 31.5 bits (68), Expect = 0.077
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = -2

Query: 452 TYFTVFFKSSKTISQDIRSSAHIVCSFQGVVLYTRLVDQWS*MFTLYNIDQSPTGYCVHL 273
           TYF  F       S+ I SS  I   F   +LY  L   W   F++Y +       C ++
Sbjct: 293 TYFVFFMAIKIFFSEPIVSSLGIYNGFVNGLLYFFLQAIWPVYFSIYKMSDMAAS-CTYM 351

Query: 272 EHAPPCV 252
              P CV
Sbjct: 352 AAMPACV 358


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = -2

Query: 476 LFANNFNITYFTVFFKSSKTISQDIRSSAHI 384
           ++AN FN+T + + F+ +  +  D+++S H+
Sbjct: 151 VYANTFNVTNYILDFEQADKLLSDLKNSNHV 181


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +2

Query: 122 FCHLLSSVYIAIHTGEDRQEWRRIIQEKVIRGG 220
           F H+    Y+ +H G  + +W R+++      G
Sbjct: 65  FWHIFKGDYVYVHQGPLKGKWGRVVETNKYTNG 97


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 243 NPQHRGSWPPLITFS 199
           NP HRG+W  + T S
Sbjct: 438 NPSHRGNWAAIATMS 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,511
Number of Sequences: 5004
Number of extensions: 39831
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)