BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV31925 (516 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 31 0.077 SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 29 0.41 SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 3.8 SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.7 >SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 525 Score = 31.5 bits (68), Expect = 0.077 Identities = 20/67 (29%), Positives = 27/67 (40%) Frame = -2 Query: 452 TYFTVFFKSSKTISQDIRSSAHIVCSFQGVVLYTRLVDQWS*MFTLYNIDQSPTGYCVHL 273 TYF F S+ I SS I F +LY L W F++Y + C ++ Sbjct: 293 TYFVFFMAIKIFFSEPIVSSLGIYNGFVNGLLYFFLQAIWPVYFSIYKMSDMAAS-CTYM 351 Query: 272 EHAPPCV 252 P CV Sbjct: 352 AAMPACV 358 >SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 2|||Manual Length = 560 Score = 29.1 bits (62), Expect = 0.41 Identities = 9/31 (29%), Positives = 21/31 (67%) Frame = -2 Query: 476 LFANNFNITYFTVFFKSSKTISQDIRSSAHI 384 ++AN FN+T + + F+ + + D+++S H+ Sbjct: 151 VYANTFNVTNYILDFEQADKLLSDLKNSNHV 181 >SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein subunit L40|Schizosaccharomyces pombe|chr 1|||Manual Length = 279 Score = 25.8 bits (54), Expect = 3.8 Identities = 8/33 (24%), Positives = 16/33 (48%) Frame = +2 Query: 122 FCHLLSSVYIAIHTGEDRQEWRRIIQEKVIRGG 220 F H+ Y+ +H G + +W R+++ G Sbjct: 65 FWHIFKGDYVYVHQGPLKGKWGRVVETNKYTNG 97 >SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 977 Score = 25.0 bits (52), Expect = 6.7 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = -1 Query: 243 NPQHRGSWPPLITFS 199 NP HRG+W + T S Sbjct: 438 NPSHRGNWAAIATMS 452 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,052,511 Number of Sequences: 5004 Number of extensions: 39831 Number of successful extensions: 83 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 83 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 208287218 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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