Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31925
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  27   6.9  
SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)                    27   9.2  
SB_18558| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  
SB_3514| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -2

Query: 437  FFKSSKTISQDIRSSAHIVCSFQGVVLYTRLVDQWS*MFTLYNIDQSPTGYCV 279
            +F  ++ +S D +S    VC+F   V+ T  +  W+      ++D SP G+ +
Sbjct: 1156 YFSLAQALSNDSKSGYRRVCAFVHQVVRTAALTHWA-----LSLDISPKGHLI 1203


>SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)
          Length = 486

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 53  HTRGPTTSKVYR--YLHSFETRYASFCHLLSSVYIAIHTGED 172
           HT     S  YR  YLH++ TRY S  + L+   I   TG+D
Sbjct: 309 HTYRTRYSHTYRTIYLHTYRTRY-SLTYRLTGQDIRTLTGQD 349


>SB_18558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 121 ILSFIIFCLHCYSHRRG*AGVAQD 192
           +L  + FCL C  HR+  AGV +D
Sbjct: 95  LLRCVSFCLECCWHRQDGAGVTRD 118


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 68  TTSKVYRYLHSFETRYASFCHLLSSVYIAIHTGED 172
           ++SKV   +HS E  Y+SF  L S   +   TG D
Sbjct: 286 SSSKVLHLVHSTEHPYSSFVVLESGTCLVAQTGFD 320


>SB_3514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 95  HSFETRYASFCHLLSSVYIAIHTGEDRQEWRRI-IQEKVIRGGHD 226
           ++F TR +S+ H+++S+Y      E +  W     Q+K+   G D
Sbjct: 429 YAFTTRKSSYGHMITSIYGLEERPEKKMHWMLFATQDKMASTGID 473


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,611,403
Number of Sequences: 59808
Number of extensions: 307918
Number of successful extensions: 684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)