Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31925
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    30   1.1  
AC024798-10|AAK29912.1|  254|Caenorhabditis elegans Hypothetical...    27   6.0  

>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 15
           protein.
          Length = 1217

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -2

Query: 476 LFANNFNITYFTVFFKSSKTISQDIRSSAHIVCSFQGVVLYTRL 345
           LF+N FN  ++  +FK +K +++D+   +H+  +    VL  RL
Sbjct: 340 LFSNEFNSCFYLEYFK-NKNLNEDLLRVSHVWVAVGNRVLRVRL 382


>AC024798-10|AAK29912.1|  254|Caenorhabditis elegans Hypothetical
           protein Y48G9A.12 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 437 FFKSSKTISQDIRSSAHIVCSFQGVVLYTR-LVDQWS*MFTLYN 309
           FF S +T S D     H  C+F  V L +   ++++S +F+L N
Sbjct: 173 FFASRQTFSGDFGLKLHKFCNFPRVFLLSESFLERYSVVFSLEN 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,033
Number of Sequences: 27780
Number of extensions: 225545
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)