Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31924
(405 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.029
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 30 0.12
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.21
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 29 0.21
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.27
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 29 0.27
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.36
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 27 0.84
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.1
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 1.1
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 1.5
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 26 1.9
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 26 1.9
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 26 1.9
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 2.6
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc... 26 2.6
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 3.4
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 3.4
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 25 3.4
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 4.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 4.5
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 25 4.5
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 4.5
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 4.5
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 25 4.5
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 25 5.9
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 25 5.9
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 5.9
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 24 7.8
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 32.3 bits (70), Expect = 0.029
Identities = 24/88 (27%), Positives = 41/88 (46%)
Frame = +3
Query: 57 EALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQET 236
EALE+ +Q +E +E K ++ +L E+ V+N +E ++ K +
Sbjct: 1362 EALEKEKQELETKLQETAKETDTFKQQVNSLNEE----VENLKKEVEQANTKNTRLAAAW 1417
Query: 237 NEKLAPKIKAAYDDFAKNTQEVIKKIQE 320
NEK K++ FA QE+ K +E
Sbjct: 1418 NEKCENLKKSSLTRFAHLKQELTNKNKE 1445
Score = 25.0 bits (52), Expect = 4.5
Identities = 21/80 (26%), Positives = 41/80 (51%)
Frame = +3
Query: 99 EELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDD 278
EEL+K +EK +++L+ +Q T +E+ ++V+S + E E L +++ A
Sbjct: 1355 EELKKNCEALEKE----KQELETKLQETAKETDTFKQQVNS-LNEEVENLKKEVEQAN-- 1407
Query: 279 FAKNTQEVIKKIQEAANAKQ 338
KNT+ ++ N K+
Sbjct: 1408 -TKNTRLAAAWNEKCENLKK 1426
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 30.3 bits (65), Expect = 0.12
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +3
Query: 48 KAKEALE---QSRQNIERTAEELRKAHPDVEKNATALREKLQAAV-----QNTVQESQKL 203
K KE +E Q ++ +ER E LRK D K+ + +AA+ + + E QKL
Sbjct: 128 KEKEEMEGSLQGKEKLEREVENLRK-ELDKYKDLVETEAEKRAAITKEECEKSWLEQQKL 186
Query: 204 AKKVSSNVQETNEKLAPKIK 263
K + T +KL KI+
Sbjct: 187 YKDMEQENASTIQKLTSKIR 206
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 29.5 bits (63), Expect = 0.21
Identities = 14/65 (21%), Positives = 31/65 (47%)
Frame = +3
Query: 48 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 227
KA + LE+ ++ E + EE+ H + T+ + + + +QE ++ K +
Sbjct: 353 KACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEKIIQEKSRVDKMIDEYR 412
Query: 228 QETNE 242
Q+ +E
Sbjct: 413 QKLSE 417
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 29.5 bits (63), Expect = 0.21
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +3
Query: 30 LGDANGKAKEALEQSRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQK 200
+ +A KA+++LEQ+ + E L K H + E+ + +EKL A ++ + S++
Sbjct: 52 INEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEE 111
Query: 201 L 203
L
Sbjct: 112 L 112
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.1 bits (62), Expect = 0.27
Identities = 21/88 (23%), Positives = 46/88 (52%)
Frame = +3
Query: 63 LEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNE 242
++ Q+IE T L K D+E++ +++ + V + Q+ ++++ +Q+T E
Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553
Query: 243 KLAPKIKAAYDDFAKNTQEVIKKIQEAA 326
L+ K + DD+ +EV+ K++ A
Sbjct: 554 VLSKSSKES-DDY----EEVVGKLRTEA 576
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 29.1 bits (62), Expect = 0.27
Identities = 17/69 (24%), Positives = 38/69 (55%)
Frame = +3
Query: 48 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 227
K+++ LE S Q +E E + P+V++ +EK ++ V+ +E +K+S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-----EKISRNL 185
Query: 228 QETNEKLAP 254
+ ++ ++P
Sbjct: 186 RSSSRSISP 194
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 0.36
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Frame = +3
Query: 48 KAKEALEQSRQNIERTAEELRKAHPDV---EKNATALREKLQ--AAVQNTVQESQKLAKK 212
K +E ++ +NI+ E+LRK+ + + A LRE + T++ +
Sbjct: 679 KKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHS 738
Query: 213 VSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAANAKQ-*ASILNSH 362
S+ + TN L+ ++ + +D + T V Q++ KQ S++NS+
Sbjct: 739 SLSDAKNTNAILSSELTKSSEDVKRLTANVETLTQDSKAMKQSFTSLVNSY 789
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 27.5 bits (58), Expect = 0.84
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 78 ASTVPKPPWPCRSRLRALPG 19
AST+ K PWP + L +PG
Sbjct: 38 ASTLEKEPWPASTALLVMPG 57
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 1.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 51 AKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 155
A E +++ +IER+A K A + E+ ATALRE
Sbjct: 157 ASERAREAQSSIERSASLREKQAREEAERAATALRE 192
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.1 bits (57), Expect = 1.1
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = +3
Query: 48 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 227
KAKE ++ R +RTA E+RK +E+ R + A Q + Q +++ +
Sbjct: 164 KAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRAERAAEAQRVAGKEQ-----LANIL 218
Query: 228 QETNEKLAPKIKAAYDDFAKNTQE 299
+ + + L +I+ A + + T E
Sbjct: 219 KHSTDLLEARIERANINISAQTSE 242
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 15 SLQGALGDANGKAKEALEQSRQNIE-----RTAEELRKAHPDVEKNATALREKLQAA 170
S++ L + N + KE +E + RT +E EKN LRE+L+ A
Sbjct: 520 SMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTA 576
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 1.9
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +3
Query: 78 QNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPK 257
+NI + E+ R + NA+ + K Q + T++ Q+LAK + +++ E+L+
Sbjct: 136 KNILKAIEDSRYPFVANKLNASTIEVKPQ---RTTLESRQQLAKVLEGYAKDSREQLSAM 192
Query: 258 IKAAYDDFAKN 290
+ AKN
Sbjct: 193 RTELKKEIAKN 203
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 1.9
Identities = 13/86 (15%), Positives = 41/86 (47%)
Frame = +3
Query: 54 KEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQE 233
K ++R+N++ + + P+++ + + +L+ +++++ Q + + V+E
Sbjct: 81 KRRNRKARENLKVNVSSIGEVLPEIDLDISVANSRLKPVIKDSLSSKQTKSSMKRNTVEE 140
Query: 234 TNEKLAPKIKAAYDDFAKNTQEVIKK 311
E+ +K + F N E +++
Sbjct: 141 I-ERFQAILK--HPSFVSNPLETVRE 163
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 1.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 63 LEQSRQNIERTAEELRKAHPDVEK 134
+EQ+R E T E++++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +3
Query: 210 KVSSNVQET--NEKLAPKIKAAYD 275
+V N++ET EK A K+KA+YD
Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322
>SPAC23H4.11c |cnl2||centromere localized protein
Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 2.6
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +3
Query: 54 KEALEQSRQNIERTAEELRKAHPD--VEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 227
++ L + R NI ++ + K+ D + N L+ A+ + V+E ++
Sbjct: 53 QKRLAKLRANIHLESQVIGKSRIDRMLATNVEKLQTVSHASTLHDVEEFYTSHSAKPLDI 112
Query: 228 QETNEKLAPKIKAAY 272
E NE+L+ +++AY
Sbjct: 113 SEINERLSEAVQSAY 127
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 3.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 105 LRKAHPDVEKNATALREKLQAAVQNTVQE 191
L AH D+E T++RE+L++ + +E
Sbjct: 267 LDSAHSDLELELTSIRERLESLILEKQEE 295
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.4 bits (53), Expect = 3.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 42 NGKAKEALEQSRQNIERTAEELRKAHPDVEKN 137
N K KE E++ + EELR+A PD E++
Sbjct: 22 NEKLKEDFEENVSIDVKIHEELRRALPDYEES 53
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 3.4
Identities = 14/66 (21%), Positives = 33/66 (50%)
Frame = +3
Query: 129 EKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIK 308
EK + +EK A ++QE + ++ SNV+ +N +L ++ + +++ +
Sbjct: 83 EKKIKSKQEKEIAHALQSIQERELRERQQMSNVEASNAQLLTNQRSMQTEISESLLHLAS 142
Query: 309 KIQEAA 326
++E A
Sbjct: 143 VLKENA 148
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 157 FSRRAVAFFSTSGWALRSSSAVRSMF 80
FSR V FFS AL+S S + +MF
Sbjct: 570 FSRGGVLFFSILFCALQSLSEIANMF 595
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 4.5
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 72 SRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQE-TNEKL 248
S NI+ + + ++ ++EKN R ++ A ++ + +Q L ++ + +E N K
Sbjct: 630 SAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRKELENSKY 689
Query: 249 APKIKAAYDDFAKNTQEVIKK 311
++ A N E KK
Sbjct: 690 QQQLSTDRLTNANNDVEAFKK 710
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 33 GDANGKAKEALEQSRQNIERTAEE 104
G NG+AKE E+ R ++T E+
Sbjct: 473 GKGNGRAKETPEEKRARKKKTKED 496
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 4.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 36 DANGKAKEALEQSRQNIERTAEE 104
D+ KAK LEQ+R +ERT E
Sbjct: 403 DSIKKAKTELEQARIELERTQRE 425
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 84 CSASTVPKPPWPCRSRLRALPGDS 13
C +T+PKPP+ + L LP S
Sbjct: 290 CPHTTIPKPPYQSDTDLTELPTKS 313
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 69 QSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSS 221
++RQ E A+ +RK+ PDV + ++ +V + +E + +SS
Sbjct: 284 ENRQFSEYVADRIRKSFPDVSFKNLHVLSCMEDSVMSPFRELGSVTSSMSS 334
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 147 LREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAK 287
+REK+Q+ + + S KL + V++ +++ K Y DFAK
Sbjct: 129 IREKIQSIDKEIEETSSKLESLRNGTVKQISKEAMQKTDKNY-DFAK 174
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 24.6 bits (51), Expect = 5.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 287 EHPGGDQEDPGGRQRQAVSVDIELSHL 367
EH G D+E+ R+R +DIEL+++
Sbjct: 67 EHFGLDEEELKSRRRFVSELDIELNNI 93
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 24.6 bits (51), Expect = 5.9
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +3
Query: 75 RQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETN-EKLA 251
R + + A++L + P +EK E + + +E L++ SSN N + L
Sbjct: 189 RCRVNKKAKKLFGSEPSIEKTNWIEAEFTRRHTKRKEKERACLSQNQSSNASRANSQSLL 248
Query: 252 PKIKAAYDDFAKNTQEVIKKIQEAANA 332
P + + + N I A NA
Sbjct: 249 PDLDLLATNSSANAVLQGSAINNALNA 275
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 24.2 bits (50), Expect = 7.8
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +3
Query: 57 EALEQSRQNIE-RTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQE 233
+ E++ + I+ R+ EEL++A + + A +EK + E +K K+ +Q+
Sbjct: 28 DQFEETEEEIKKRSPEELKQAIEALREKAKEKKEKERI----LALEEKKTNYKI---LQK 80
Query: 234 TNEKLAPKIKAAYDDFAKNTQEVIKKIQEAANAKQ*ASIL 353
+N++ A ++ D + I++ Q+A +A+Q IL
Sbjct: 81 SNDETAQAMRKMQDQARLRDLQKIRQ-QKAEDAEQRKKIL 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,123,455
Number of Sequences: 5004
Number of extensions: 16307
Number of successful extensions: 110
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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