Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31922
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 50 8e-07
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 45 3e-05
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 45 3e-05
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 44 6e-05
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 42 3e-04
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 42 3e-04
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 39 0.003
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 2.9
05_01_0372 - 2913518-2916562,2916674-2917528 27 6.8
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887... 27 8.9
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 50.4 bits (115), Expect = 8e-07
Identities = 34/80 (42%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Frame = +3
Query: 306 DRKNLHVIKNAIATKIVF-------KPGXNIXSGXLXNKGGRDIAV---NVXKEVVVSAG 455
+ NL V+ +A T+I+F KP I GG+ A N E+++SAG
Sbjct: 240 NHNNLRVLLHASVTRIIFNTEQEHRKP-RTIGVEFKDENGGQQHAFLTRNRDSEIIISAG 298
Query: 456 AINSPQLLXLSGIGPRKHLE 515
AI SPQLL LSGIGPRK L+
Sbjct: 299 AIGSPQLLLLSGIGPRKELK 318
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3
Query: 435 EVVVSAGAINSPQLLXLSGIGPRKHLE 515
EV+VSAG + SPQLL LSG+GP+ HLE
Sbjct: 279 EVIVSAGTLGSPQLLMLSGVGPQAHLE 305
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Frame = +3
Query: 318 LHVIKNAIATKIVF--KPGXNIXSGXLXN--KGGRDIAV---NVXKEVVVSAGAINSPQL 476
+ V A +IVF K + G L + +GG +A E+++SAGA+ SPQL
Sbjct: 222 IDVFLRARVARIVFSRKGTKPVARGVLYHDARGGSHMAYLNHGARNEIILSAGALGSPQL 281
Query: 477 LXLSGIGPRKHLE 515
L LSG+GP HLE
Sbjct: 282 LMLSGVGPADHLE 294
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +3
Query: 423 NVXKEVVVSAGAINSPQLLXLSGIGPRKHL 512
N E++VSAGAI SPQLL LSGIGP+ L
Sbjct: 274 NCDSEIIVSAGAIGSPQLLLLSGIGPKNDL 303
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +3
Query: 435 EVVVSAGAINSPQLLXLSGIGPRKHL 512
E+++SAGA+ SPQLL LSG+GP HL
Sbjct: 275 EIILSAGAMGSPQLLMLSGVGPADHL 300
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +3
Query: 435 EVVVSAGAINSPQLLXLSGIGPRKHLE 515
EV+V+AG + SPQLL LSG+GPR LE
Sbjct: 274 EVIVTAGTLGSPQLLMLSGVGPRGELE 300
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +3
Query: 435 EVVVSAGAINSPQLLXLSGIGPRKHL 512
EV++SAG++ SPQLL LSGIGP L
Sbjct: 301 EVILSAGSLGSPQLLLLSGIGPANDL 326
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +3
Query: 348 KIVFKPGXNIXSGXLXNKGGRDIAVNVXKEVVVSAGAINSPQLLXLSGIGPRKHLE 515
KI + PG + N+ N+ KE + LL L+ + P+KH+E
Sbjct: 553 KITYLPGFHKKGTPPGNEQNASFFTNILKEHAALIDSETMKALLWLAKLSPKKHIE 608
>05_01_0372 - 2913518-2916562,2916674-2917528
Length = 1299
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 360 KPGXNIXSGXLXNKGGRDIAVNVXKEVVVSAGAINSPQ 473
KP + + GG D + + KEV VSAGA +PQ
Sbjct: 167 KPEEDNEGEEVATGGGDDGELGMEKEVDVSAGAAEAPQ 204
>05_05_0114 -
22488172-22488279,22488414-22488511,22488616-22488784,
22489310-22489377,22490485-22490521,22490660-22490741,
22490845-22490903
Length = 206
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 12 EGWSFXEVLPYFKKSESFMGKFDAEATKYHS 104
E W+ + LP+ K+ + + G F + YHS
Sbjct: 138 EMWTMYQALPFVKERKLYSGFFGKFSMSYHS 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,787,402
Number of Sequences: 37544
Number of extensions: 152413
Number of successful extensions: 239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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