Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31922
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    67   6e-12
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    27   8.0  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   8.0  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 67.3 bits (157), Expect = 6e-12
 Identities = 49/175 (28%), Positives = 72/175 (41%), Gaps = 9/175 (5%)
 Frame = +3

Query: 15  GWSFXEVLPYFKKSESFMGKFDAEATKYHSKGGYLXVXSDDNMHEIEDLIIKAAXEL*LK 194
           GW++   LPYFKK+E++          Y    G L V   D  + +    +    E  L 
Sbjct: 149 GWNYANCLPYFKKAETYSDATGPN-DPYRGNNGPLYVKKGDAENPLHKAWLNVGKEHPLG 207

Query: 195 NLTDCNGDSQIGVMXXXXXXXXXXXXXXXXXXLSPIXDRKNLHVIKNAIATKIVFKPGXN 374
              D NG+ Q G+                   + PI +R NL        T+++F     
Sbjct: 208 WTNDMNGEKQEGISTMDMTIHNGERWSASKAYVHPIRNRPNLITSSGITCTRVLFDTNKA 267

Query: 375 IXSGXLX--NKGGRDIAVNVXKE-------VVVSAGAINSPQLLXLSGIGPRKHL 512
           I    +   N  G D   +  +E       V+++ GAIN+PQLL LSG+GP  HL
Sbjct: 268 IGIEFIRKLNFVGTDSIDSYSREKIYCQGDVILAGGAINTPQLLMLSGVGPADHL 322


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 113  TAFAVVFSRLRVKFTHEAFTFLKVGQDFLET 21
            T F  VF     +F H AF F  VG++ +ET
Sbjct: 2262 TEFRTVFVSEDHQFVHGAFGFRAVGEEHIET 2292


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 113  TAFAVVFSRLRVKFTHEAFTFLKVGQDFLET 21
            T F  VF     +F H AF F  VG++ +ET
Sbjct: 7108 TEFRTVFVSEDHQFVHGAFGFRAVGEEHIET 7138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,920,206
Number of Sequences: 27780
Number of extensions: 128736
Number of successful extensions: 203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)