Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31920
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3)                     31   0.56 
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   29   2.3  
SB_41475| Best HMM Match : HSA (HMM E-Value=7.5)                       28   4.0  

>SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3)
          Length = 604

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -3

Query: 175 VHCLKTIRIHWIRMRSYSSLRLHALTGS*DLQFLQDSAL 59
           ++ ++ +RI  IR+ +Y+  R+H+  G+ D++F  D +L
Sbjct: 274 INFIRPVRIAMIRIWNYNKSRIHSYRGARDVEFSLDGSL 312


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 232 FTLLVLIVNFRKADFLSISISSTNAL 309
           FTL+ LIV FR+ D+L++ +S   A+
Sbjct: 517 FTLVFLIVRFREPDYLNLGLSCVFAI 542


>SB_41475| Best HMM Match : HSA (HMM E-Value=7.5)
          Length = 195

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -3

Query: 226 IFWSYVTLPYLQYLKSPVHCLKTIRIHWIRMRSYSSLRLH 107
           ++  Y++  Y +Y+ + VH  +  R+H  R+      R+H
Sbjct: 93  VYTEYMSTGYTEYMSTGVHEYRVHRVHEYRVHRVHEYRVH 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,482,021
Number of Sequences: 59808
Number of extensions: 266993
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)