Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31919
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    54   2e-08
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    26   2.9  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   8.9  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 27/92 (29%), Positives = 50/92 (54%)
 Frame = +1

Query: 148 LLSTWTFGLAVSSGLFIPNLLTGAAWGRLLAISIQYMLPSKTINPAKYXXXXXXXXXXXX 327
           LL++ TFG A+ +G+ +P+L  GA  GR +   ++   PS     + Y            
Sbjct: 396 LLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLKSRFPS-LAGTSIYGVIGSIAFLSST 454

Query: 328 XRMTISLTVIIIETTGQISNALPIMITLVVAQ 423
            R+ ++L VI+ E TG ++ ALP+M+  ++++
Sbjct: 455 TRLVVALVVILFELTGALNIALPLMLATLISK 486


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 236 SNLPHAAPVSRFGMNKPLETARP 168
           S LP   P +R   N P+E +RP
Sbjct: 575 SRLPENLPTTRSSSNNPIEASRP 597


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 56  KRPKRRYDRSST 91
           K+PKRRY +SST
Sbjct: 372 KKPKRRYSKSST 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,672
Number of Sequences: 5004
Number of extensions: 44133
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)