Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31919
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28219| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_50267| Best HMM Match : Voltage_CLC (HMM E-Value=6.9e-31) 48 3e-06
SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_44807| Best HMM Match : Voltage_CLC (HMM E-Value=0.0094) 45 4e-05
SB_25467| Best HMM Match : Voltage_CLC (HMM E-Value=2.4e-10) 42 3e-04
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 0.98
SB_23501| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_7530| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_5592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_43998| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36) 28 5.3
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15) 27 9.2
>SB_28219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 217 AAWGRLLAISIQYMLPSKTIN-PAKYXXXXXXXXXXXXXRMTISLTVIIIETTGQISNAL 393
A WGR+ A + + P+ + + P +Y RMT+SLTVI++E T I+ L
Sbjct: 2 ATWGRMFATLLHSVFPTWSWSTPGRYALIGAAASLGGVVRMTLSLTVILMEATSNITYGL 61
Query: 394 PIMITLVVAQ 423
P+M+ L++A+
Sbjct: 62 PMMLVLMIAK 71
>SB_50267| Best HMM Match : Voltage_CLC (HMM E-Value=6.9e-31)
Length = 347
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +1
Query: 1 LQLYCEXGEYNALAAIWFQTPEASVRSFLHDPMGSYKPWSILVFVVCYFLLSTWTFGLAV 180
LQ +C+ GEY+++ + F TPE S+++ H P+G ++ + V+ S T+GL +
Sbjct: 185 LQFFCQDGEYSSMGTLTFSTPEESIKNLFHLPLGGVVRMTLSLTVILMEATSNITYGLPM 244
Query: 181 SSGLFI 198
L I
Sbjct: 245 MLVLMI 250
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = +1
Query: 331 RMTISLTVIIIETTGQISNALPIMITLVVAQ 423
RMT+SLTVI++E T I+ LP+M+ L++A+
Sbjct: 222 RMTLSLTVILMEATSNITYGLPMMLVLMIAK 252
>SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 47.6 bits (108), Expect = 6e-06
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +1
Query: 331 RMTISLTVIIIETTGQISNALPIMITLVVAQ 423
RMTISLTVI+IE+T +IS LPIMITL+VA+
Sbjct: 83 RMTISLTVILIESTNEISYGLPIMITLMVAK 113
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2
Query: 422 KWIGDFFNEGIYDIYIQLAGVPLLPW 499
KW GD FNEG+YDI+I+L +PLL W
Sbjct: 113 KWSGDLFNEGLYDIHIKLKSIPLLEW 138
>SB_44807| Best HMM Match : Voltage_CLC (HMM E-Value=0.0094)
Length = 142
Score = 44.8 bits (101), Expect = 4e-05
Identities = 16/48 (33%), Positives = 32/48 (66%)
Frame = +1
Query: 115 WSILVFVVCYFLLSTWTFGLAVSSGLFIPNLLTGAAWGRLLAISIQYM 258
W +L+ + +++ +TFG+ V +GLFIP++ GA GR++ I ++ +
Sbjct: 93 WQLLLAALFKLIITVFTFGIKVPAGLFIPSMAIGACIGRIIGIGVEQL 140
>SB_25467| Best HMM Match : Voltage_CLC (HMM E-Value=2.4e-10)
Length = 300
Score = 41.9 bits (94), Expect = 3e-04
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Frame = +1
Query: 37 LAAIWFQTPEASVRSFLHDPMGSYKPWSILVFVVCYFLLSTWTFGLAVSSGLFIPNLLTG 216
L A++ Q E F + + P+ I F+ + L+ LA S L + + +G
Sbjct: 137 LLAVFIQEEETITALFKTNFRVDF-PFDIEEFIA-FALIGVPPVTLAFSQCLNLNVMCSG 194
Query: 217 AAWGRLLAISIQYMLPSKT--------INPAKYXXXXXXXXXXXXXRMTISLTVIIIETT 372
AA+GRL+ ++ P + P Y TIS +VI+ E T
Sbjct: 195 AAFGRLVGEAMATWFPDGVRSGDVVFPVVPGGYAVVGAAAMSGAVTH-TISTSVIVFELT 253
Query: 373 GQISNALPIMITLVVAQMDRRFLQ 444
GQI++ LP+MI +++A ++LQ
Sbjct: 254 GQIAHILPVMIAVLIANAIAQWLQ 277
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 30.3 bits (65), Expect = 0.98
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +2
Query: 248 YSTCYLPRLLTQPSTRWSVRPLNWEASY 331
Y C+ L QP RW +P W Y
Sbjct: 3021 YDVCFFSNLSVQPPKRWHGKPFGWLGCY 3048
>SB_23501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -1
Query: 246 GYSEQSSPRGAGQQVRYEQTAGNGQTERP----RREQEVAYDE 130
GY +Q P G GQQ +Q++G GQ ++P +R+Q Y +
Sbjct: 375 GYGQQQQPSGYGQQ---QQSSGYGQQQQPSGYGQRQQPSGYGQ 414
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 246 GYSEQSSPRGAGQQVRYEQTAGNGQTERP 160
GY +Q P G GQQ +Q +G GQ ++P
Sbjct: 357 GYGQQQQPSGYGQQ---QQPSGYGQQQQP 382
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 246 GYSEQSSPRGAGQQVRYEQTAGNGQTERP 160
GY ++ P G GQQ +Q++G GQ ++P
Sbjct: 339 GYGQRQQPSGYGQQ---QQSSGYGQQQQP 364
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = -1
Query: 246 GYSEQSSPRGAGQQVRYEQTAGNGQTERP----RREQEVAYDE 130
GY ++ P G GQQ +Q +G GQ ++P +R+Q Y +
Sbjct: 312 GYGQRQQPSGYGQQ---QQPSGYGQWQQPSGYGQRQQPSGYGQ 351
>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 30.3 bits (65), Expect = 0.98
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 422 KWIGDFFNEGIYDIYIQLAGVPLLPWEP 505
KW+GDF +Y ++L +P L EP
Sbjct: 205 KWVGDFTTHPLYHALLELKCIPFLDSEP 232
>SB_7530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -1
Query: 246 GYSEQSSPRGAGQQVRYEQTAGNGQTERP----RREQEVAYDE 130
GY ++ P G GQQ +Q++G GQ ++P +R+Q Y +
Sbjct: 65 GYGQRQQPSGYGQQ---QQSSGYGQQQQPSGYGQRQQPSGYGQ 104
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = -1
Query: 246 GYSEQSSPRGAGQQVRYEQTAGNGQTERP----RREQEVAYDE 130
GY ++ P G GQQ +Q +G GQ ++P +R+Q Y +
Sbjct: 38 GYGQRQQPSGYGQQ---QQPSGYGQWQQPSGYGQRQQPSGYGQ 77
>SB_5592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 86 STTRWARTSPGLY*CSSYATSCSRRGRSVW 175
S T W RTSP + S ++ S R+ VW
Sbjct: 66 SRTSWTRTSPTMSNTSCFSRSYQRKTEEVW 95
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 121 ILVFVVCYFLLSTWTFGLAVSSGLFIPNLLTGAAWGRLLAISIQYMLPSKTI 276
+L +C +LL +T +G P LLT A+W L YM+ S +
Sbjct: 1633 LLALAICAYLLDIYTVFEFGGTGYCFPKLLTIASWRAFLGF---YMIFSSVV 1681
>SB_43998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 242 IASNLPHAAPVSRFGMNKPLETARPNVHVESRK*HTTNTSIDQ 114
+ S P +AP+ G N + T +PN + +K N S D+
Sbjct: 95 LISKWPRSAPIQNLGHNLTIRTFKPNRNEAKQKPGNENMSDDE 137
>SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)
Length = 1346
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 440 FNEGIYDIYIQLAGVPLLPWEPXPL 514
F + Y +Y+QL G+ LPW PL
Sbjct: 179 FTDMSYRLYLQLYGIYKLPWMSFPL 203
>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
Length = 333
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 109 CTSP-SGRGGTIVPTLRAFGTISRLARCTRRXRSITV 2
C +P + R T+VP++ T L C RR + +TV
Sbjct: 219 CVTPGASRTPTLVPSINGGNTTPPLCDCGRRAKRLTV 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,739,428
Number of Sequences: 59808
Number of extensions: 363880
Number of successful extensions: 913
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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