Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31919
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   10.0 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   10.0 
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   10.0 

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = +1

Query: 340 ISLTV---IIIETTGQISNALPIM 402
           +SLTV   ++ ET  Q+S+A+P++
Sbjct: 234 LSLTVFLNLVAETLPQVSDAIPLL 257


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = +1

Query: 340 ISLTV---IIIETTGQISNALPIM 402
           +SLTV   ++ ET  Q+S+A+P++
Sbjct: 234 LSLTVFLNLVAETLPQVSDAIPLL 257


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = +1

Query: 340 ISLTV---IIIETTGQISNALPIM 402
           +SLTV   ++ ET  Q+S+A+P++
Sbjct: 234 LSLTVFLNLVAETLPQVSDAIPLL 257


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = +1

Query: 340 ISLTV---IIIETTGQISNALPIM 402
           +SLTV   ++ ET  Q+S+A+P++
Sbjct: 302 LSLTVFLNLVAETLPQVSDAIPLL 325


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -2

Query: 245 DIASNLPHAAPVSRFGMNKPLETARPNVHVESRK*HTTNTSI---DQGLYEPIGSWRND 78
           ++  +LP +   S+  + +  +   PN  +  +  HTT++S     +GL +  GS  +D
Sbjct: 378 ELPKHLPTSLTKSKMEVMELSDLHHPNCKINRKVHHTTSSSSAAGGEGLADRRGSESSD 436


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = -2

Query: 290 YLAGLIVLEGNMYCMDIASNLPHAAPVSRFGMNKPLETA 174
           YLA +  +  ++   ++  N      ++ FG+++ +E+A
Sbjct: 750 YLAEMNYVHRDLAARNVLVNAALVCKIADFGLSREIESA 788


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +2

Query: 44  RYGSKRPKRRYDRSSTTRWAR 106
           RYG   P   Y  + T  W R
Sbjct: 222 RYGDAIPTVPYTETETETWTR 242


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 214 GAAWGRLLAISIQYMLPSKTI 276
           G  WG ++A  +  + P K I
Sbjct: 2   GGDWGSVIASDMAVLFPEKII 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,127
Number of Sequences: 438
Number of extensions: 3414
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)