Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31915
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    31   0.14 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.2  
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   2.9  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   5.1  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   6.7  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    25   8.9  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   8.9  
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.9  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 110 THLDMIGRNETP----SKKARFWQSFVRSLKGSEDIRAEERYRPTRR 238
           T  +  GR+ +P    S+K R  +  +RS   S   R E+RYRPTRR
Sbjct: 201 TERNRYGRSPSPHSRFSEKPRGERYDIRSYSRSHKERYEDRYRPTRR 247


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +2

Query: 194 SEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREI---Y 364
           S D+   E     RR+  P+    +  SK+ Y  P    E I     +   V +     Y
Sbjct: 573 SSDVHKNENAGTARRA--PQS-GAFVASKAKYSSPYDLPEEIVQVAQQKRSVSQNYNRQY 629

Query: 365 GYSPRPIYAHNYPRSL 412
            + PRP    N PRSL
Sbjct: 630 SFQPRPATPSNPPRSL 645


>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 485 NHEN*KLVFKLDDPLKLFGLAC 420
           NHEN   +FK+D   K F L+C
Sbjct: 4   NHENPHFLFKIDSYSKTFLLSC 25


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 195 RKTSEPRKGTGQHAAA--FFPNSCRPTLTPSRFT 290
           ++T+  + GT  +A A  F PN   P  TP +FT
Sbjct: 415 KETTGTKLGTKLNAKAISFKPNVAAPVFTPGKFT 448


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = +1

Query: 127 WQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLPLLQVDLRRPYRC 306
           W+  D +   ++ AV+ A ++        G++  ++P R +  P+ + L  V   +    
Sbjct: 719 WETPD-IRVMRVKAVMPANNRAAVLRIYAGRLGVSSPVRTAPHPMAMSLPFVHHGKNKAL 777

Query: 307 R*EDYGTRLPLPACPSRDL 363
              ++ TR P+P CPS DL
Sbjct: 778 ---EFVTRHPVPHCPSVDL 793


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 203 CLPNLLENARRTAKIWLSSTASRFCQSCLNV 111
           C   +L +AR   K WLSS  S      LN+
Sbjct: 157 CDEEILVDARNQIKNWLSSELSHSTSKYLNI 187


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 17/82 (20%), Positives = 31/82 (37%)
 Frame = +3

Query: 168 SPSCVL*KVRKTSEPRKGTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCL 347
           +PS  L      S  +           P+S +   T S FTT +++      +P T+   
Sbjct: 484 TPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYSTSSNFTTPITISTSLSSFPTTIVSS 543

Query: 348 SIARSTATPRALSMPTTTLALS 413
           S   S+ +    +    + +LS
Sbjct: 544 SFQYSSLSSNVTTTNAQSSSLS 565


>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 128

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 379 PYLCPQLPSLSRLLQANP 432
           P+L P   SL R+LQ NP
Sbjct: 2   PFLKPSKVSLKRILQGNP 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,625
Number of Sequences: 5004
Number of extensions: 43535
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)