Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31915
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 2.2
02_04_0271 + 21445113-21445865,21446727-21446788,21446927-214470... 28 3.9
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 28 5.1
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 6.8
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 27 6.8
06_01_1181 + 10148653-10149405 27 6.8
10_08_0739 + 20217842-20218852 27 8.9
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671... 27 8.9
02_03_0138 - 15629421-15629440,15629521-15629752,15630115-156303... 27 8.9
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.1 bits (62), Expect = 2.2
Identities = 22/70 (31%), Positives = 28/70 (40%)
Frame = +2
Query: 221 YRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNY 400
Y PT + P S P S S P + + T P Y Y P YSP ++NY
Sbjct: 1683 YNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSP---SYSPTS-PSYNY 1738
Query: 401 PRSLDYYRPT 430
+ Y PT
Sbjct: 1739 SPTSPSYSPT 1748
>02_04_0271 +
21445113-21445865,21446727-21446788,21446927-21447027,
21447165-21447248,21448054-21448058,21448193-21448267,
21448339-21448416,21448896-21448952,21449351-21449421,
21449529-21449628,21449758-21449862,21450004-21450066,
21450144-21450266,21450371-21450514,21450598-21450672
Length = 631
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 3 GPTLDVGSSTTPHYPI*LRPLFNRIRARHRPPKCSKHI 116
GPT SS+ H P RIRA P+CSKH+
Sbjct: 47 GPTSSSSSSSDEHEP-------RRIRAEAHCPRCSKHM 77
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 184 SKRFGRHQSRGKVQANTPQR-FSRTPVDLPLLQV-DLRRPYRCR 309
SKR +HQ+R T +R F R PV LP ++ +R P + +
Sbjct: 759 SKRIYKHQNRNNNNIRTKKRYFLRRPVRLPFKEILGIRIPVKVK 802
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 346 CPSRDLRLLPAPYLCPQLPSLSRLLQANPKSLRGSSNLKT 465
C R L+P + PQ+ L ++Q +++ S+NL T
Sbjct: 450 CARRHEELIPRRSIIPQVSQLGAVVQKYQSAVQNSTNLST 489
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 346 CPSRDLRLLPAPYLCPQLPSLSRLLQANPKSLRGSSNLKT 465
C R L+P + PQ+ L ++Q +++ S+NL T
Sbjct: 460 CARRHEELIPRRSIIPQVSQLGAVVQKYQSAVQNSTNLST 499
>06_01_1181 + 10148653-10149405
Length = 250
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +2
Query: 332 YRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPTRKV 439
+RY+ VH +Y P+ + YP ++ P V
Sbjct: 155 FRYVQVHHPVYAAPGEPVQGYGYPVAMSSALPAPHV 190
>10_08_0739 + 20217842-20218852
Length = 336
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +1
Query: 235 PQRFSRTPVDLPLLQVDLRRPYRCR*EDYGTRLPLPACPSRDLRLLPAPYLCPQLPSLS 411
P S LP + P+R PLP PS L L+P+ P LP L+
Sbjct: 26 PSLISHLGAGLPAFAAGIHCPHR-------VSFPLPTAPSASLLLMPSWSAHPSLPYLA 77
>06_01_0875 +
6707483-6709394,6709750-6709829,6710077-6710174,
6710704-6710840,6710961-6711301,6711402-6711599
Length = 921
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 178 HEGLPKSGFLRRRLVSANHV*MCFEHFGGLCRARIRLN 65
H L + GF R +VS N + +C+ G +C AR N
Sbjct: 227 HNMLKRKGF-ERNVVSWNSMMICYIKAGDVCSARALFN 263
>02_03_0138 -
15629421-15629440,15629521-15629752,15630115-15630348,
15630486-15630709,15631225-15631509,15631549-15631690
Length = 378
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 134 NETPSKKARFWQSFVRSLKGSEDIRAEER 220
+E +++ WQ+F+ +KG E+ EE+
Sbjct: 135 HELATRQVECWQAFLSPMKGKEEDEGEEK 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,848,470
Number of Sequences: 37544
Number of extensions: 306634
Number of successful extensions: 978
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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