Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31913
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    30   0.18 
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    28   0.95 
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   1.7  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   3.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   5.1  
SPAC750.07c |||S. pombe specific GPI anchored protein family 1|S...    25   8.9  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    25   8.9  

>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 14/65 (21%), Positives = 32/65 (49%)
 Frame = +2

Query: 143 PGPTESYLRHHPNPXMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLHKQFNSPINL 322
           P P ++   + PNP    P + + +D   K K+  + L++ +G+   ++  +    P  +
Sbjct: 607 PAPLQNVYLYSPNPSALPPSDEEEKDINDKAKLIRNALRQRMGQRMTEIRSRD-TPPEEV 665

Query: 323 YSEQN 337
           +SE +
Sbjct: 666 FSESD 670


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +3

Query: 231 NKRWQSRCCSEWLAKRHLRCCTSNSTLQSIYTRN 332
           + RW  RCC E    R L C  S  T QS    N
Sbjct: 342 SSRWDFRCCREERLLRLLLCFDSEHTGQSFIQLN 375


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 164 LRHHPNPXMRAPPNHDY-RDTLMKQKVAESVLQRVVGEEAPKVLHKQ 301
           L  HP+  ++   N+    + LMKQK+ E     V+ +EA ++L  +
Sbjct: 476 LNMHPHDELKQLINNAVDENALMKQKINEEEETEVIAQEAEEILQDE 522


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/89 (19%), Positives = 41/89 (46%)
 Frame = +2

Query: 116 LPGAKVRREPGPTESYLRHHPNPXMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLH 295
           L   ++++    +E+YL+ +  P    P +   R+  +  ++  + L  +   +    + 
Sbjct: 52  LQALQMQQSLSESENYLQPNFFPFQSGPFSKSRRENTLLPRL--NPLAPIGARQPNPSIP 109

Query: 296 KQFNSPINLYSEQNIANSIRQXTSPLPTN 382
           +QF+ PIN      +  ++ + TSP+  N
Sbjct: 110 QQFSKPINESGTGTMGPAVGELTSPVMKN 138


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 246  SRCCSEWLAKRHL 284
            SRCC+ WL+  HL
Sbjct: 2269 SRCCTMWLSNSHL 2281


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 4/103 (3%)
 Frame = +2

Query: 92  PYRTTPLVLPGAKVRREPGPTESYLRHHPNPXMRAPPNHDYRDTLMKQKVAESVLQRVVG 271
           P    PL  P  ++ R+P P  S     P+    APP H    + +K          V G
Sbjct: 44  PVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQREASPVKNIEHSESFPSVFG 103

Query: 272 ----EEAPKVLHKQFNSPINLYSEQNIANSIRQXTSPLPTNGH 388
                +   +  K  N    LY+  N      Q ++  P N +
Sbjct: 104 TSNNHQIVPLTLKDGNDFGALYASLNTTPHFPQVSNHAPNNSN 146


>SPAC750.07c |||S. pombe specific GPI anchored protein family
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 297 LCNTLGASSPTTR 259
           L NTLG SSPTT+
Sbjct: 90  LVNTLGGSSPTTK 102


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
 Frame = +2

Query: 182 PXMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLHKQ-----FNSPI-NLYSEQNIA 343
           P  +      YRD +  + VA  +    V       LH       F  P+ NLY+E NIA
Sbjct: 93  PYSKQSKMRKYRDAITARMVANLLTVAGVDHIITLDLHASQMQGFFTRPVDNLYAEPNIA 152

Query: 344 NSIRQ 358
             IR+
Sbjct: 153 EWIRR 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,604
Number of Sequences: 5004
Number of extensions: 43750
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)